Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00050 ATGTGAAATTTGGTGTCAACACATCTTTTTGCCTGGAAATGTCCTGAACCTTAACCCTCTCCTCTCTTCTCAAGAAAACGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAATCAATCACTCTAAAATCCCATTTCTGCAAAATTCTCTCTGTTTCTAGATTTGCTGAATCAAAGAAAAACCCCATAGTTACATTCAGCATCGTCGCTTTGATTTCCTTGATTGGTAATGGGGCCAGGAGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAACTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGTGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGGGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAACAAAGAATATCCGGAAGGAATCAAGCATTTAGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCGAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTGCTAAAGCAAAATACAGGGAGTGGGAACAAGCGTCTACCGAACGTTCATGGGAATTGCAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTAGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAATCAATTAAAATCGCTAAGAAGTGTGTTTGAAAAAGTTGCCGAGGCAGATGCGCCGTCAGAGGTACCTGATTATCTTTGTTGTAAAATCACACTTGATATTCTTCGCGACCCTGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATTCTTGACCATTTTCATAAGGTTGGTAACTTTGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAGTTTAAGGAAACTTGTATTTTGAATGGGAACTCAATCAAGTTGATGGTTATGCCTGTCGTGAACGAATGGAAATACCTCAATCCCATGTCGCTAATGTCGTGATTATCTCCTCGATTCTTGTATATGGATCGTCGATTACGGTTTGTCATATATCATGCTTTCCATGACATTCTGAGGCTGTACTGTCAATTAAGTATGTGAGGTCCTGTCTTCTGATTTGGTCTTGTGCAGATTGTTACTATGAACTTGTTAATCTTCCTGTACAGTTATTACTTAAACCTTTGATTATGGTTTAGTTATTGAGGACTCTGTTCAGCAGGTA 1325 41.21 MATTIFKRVELELPLKLIPSDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELAKAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRNQLKSLRSVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFHKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTV 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1196176 1203227 - XM_039031012.1 Bhi05g00050 34260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00050 239 SUPERFAMILY RING/U-box 157 236 - -
Bhi05g00050 239 Pfam U-box domain 162 234 IPR003613 GO:0004842|GO:0016567
Bhi05g00050 239 CDD RING-Ubox_CHIP 162 228 IPR045202 -
Bhi05g00050 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 238 IPR013083 -
Bhi05g00050 239 SMART Ubox_2 165 228 IPR003613 GO:0004842|GO:0016567
Bhi05g00050 239 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Bhi05g00050 239 SUPERFAMILY TPR-like 21 93 IPR011990 GO:0005515
Bhi05g00050 239 Gene3D Tetratricopeptide repeat domain 15 102 IPR011990 GO:0005515
Bhi05g00050 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 21 237 IPR045200 GO:0000209|GO:0061630
Bhi05g00050 239 ProSiteProfiles U-box domain profile. 161 235 IPR003613 GO:0004842|GO:0016567
Bhi05g00050 239 PANTHER OS08G0113300 PROTEIN 21 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00050 Bhi-Chr5:1196176 Bhi05g00052 Bhi-Chr5:1196176 4.25E-177 dispersed
Bhi05g00049 Bhi-Chr5:1196176 Bhi05g00050 Bhi-Chr5:1196176 2.06E-163 tandem
Bhi05g00050 Bhi-Chr5:1196176 Bhi05g00051 Bhi-Chr5:1196176 4.64E-164 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00050 K09561 - csv:101215457 425.631