Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00052 GATGTGAAATTTGGTGTCAACACATCTTTTTGCCTGGAAATGTCCTGAACCTTAACCCTCTCCTCTCTTCTCAAGAAAACGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAATCAATCACTCTAAAATCCCATTTCTGCAAAATTCTCTCTGTTTCTAGATTTGCTGAATCAAAGAAAAACCCCATAGTTACATTCAGCATCGTCGCTTTGATTTCCTTGATTGGTAATGGGGCCAGGAGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAACTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGCGGAAGTATTGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGGGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAACAAAGAATATCCGGAAGGAATCAAGCATTTAGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCGAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTGCTAAAGCAAAATACAGGGAGTGGGAACAAGCGTCTACCGAACGTTCATGGGAATTGCAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTAGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAATCAATTAAAATCGCTAAGAAGTGTGTTTGAAAAAGTTGCCGAGGCAGATGCGCCGTCAGAGGTACCTGATTATCTTTGTTGTAAAATCACACTTGATATTCTTCGCGACCCTGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATTCTTGACCATTTTCATAAGGTTGGTAACTTTGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAGTTTAAGGAAACTTGTATTTTGAATGGGAACTCAATCAAGTTGATGGTTATGCCTGTCGTGAACGAATGGAAATACCTCAATCCCATGTCGCTAATGTCGTGATTATCTCCTCGATTCTTGTATATGGATCGTCGATTACGGTTTGTCATATATCATGCTTTCCATGACATTCTGAGGCTGTACTGTCAATTAAGTATGTGAGGTCCTGTCTTCTGATTTGGTCTTGTGCAGATTGTTACTATGAACTTGTTAATCTTCCTGTACAGTTATTACTTAAACCTTTGATTATGGTTTAGTTATTGAGGACTCTGTTCAGCAGGTA 1335 41.27 MATTIFKRVELELPLKLIPSGSIDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELAKAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRNQLKSLRSVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFHKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTV 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1196176 1203228 - XM_039031011.1 Bhi05g00052 34262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00052 242 ProSiteProfiles U-box domain profile. 164 238 IPR003613 GO:0004842|GO:0016567
Bhi05g00052 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 241 IPR013083 -
Bhi05g00052 242 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Bhi05g00052 242 Gene3D Tetratricopeptide repeat domain 21 105 IPR011990 GO:0005515
Bhi05g00052 242 SUPERFAMILY RING/U-box 160 239 - -
Bhi05g00052 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 24 240 IPR045200 GO:0000209|GO:0061630
Bhi05g00052 242 SUPERFAMILY TPR-like 24 96 IPR011990 GO:0005515
Bhi05g00052 242 PANTHER OS08G0113300 PROTEIN 24 240 - -
Bhi05g00052 242 CDD RING-Ubox_CHIP 165 231 IPR045202 -
Bhi05g00052 242 Pfam U-box domain 165 237 IPR003613 GO:0004842|GO:0016567
Bhi05g00052 242 SMART Ubox_2 168 231 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00050 Bhi-Chr5:1196176 Bhi05g00052 Bhi-Chr5:1196176 4.25E-177 dispersed
Bhi05g00052 Bhi-Chr5:1196176 Bhi10g02116 Bhi-Chr10:53247366 1.04E-10 dispersed
Bhi05g00051 Bhi-Chr5:1196176 Bhi05g00052 Bhi-Chr5:1196176 5.57E-164 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00052 K09561 - csv:101215457 425.246