Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00119 TTCCCATTCAATTCTTTCTCTTTGGTTTCACAACTACTCACATTTATCTCTCCCACAAATCTCATAGATCAAGAGAGAGAATTCAATTCAGAGAGATAAATACAGAATAACACTACTGAGAAGCAAAAACAAAAACAAAAAAAGCTTCAGAAACATCAATAATGGCGGTTTCCACCGCTTCTTCAATCCTCTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCAGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGAATTCGCAATAGCACAGAAAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGATCCACGTTGGCAACTGCGACGAAAGCACCTGGCCAACTGCGGGATCGGGTTTGGTCGTAATGCAGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCGATCCTGGTGATGACGATCCCGTCAATCCCAGACCAGGAACTCTTCGCCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTATTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGTTTTAAGACAATTGATGGCCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCACGGTTTGCATATTCACGACTGCAAGCCAACGGGGAACGCCATGGTTCGAAGCTCCCCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGATCAAGTCATATTTGGATTGACCATAATTCTCTTTCCACCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTATACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGACACGTATAATGGTGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGTTCCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAATTTCAAGTCACAGTTAAAATAAGATATATAAAAAGGAAAAAGGAATGAAGAAGGAAAAAAAAATCTGAACATTTAAAGGAAGAAGAAAACTATTTACTCATTTTCTTCTTCCCTATGATTGTTATAGTTATAGCATTATTCCCAATGAGTTTGAGCCATCCATTCTATTTACAACCCCCCCAACTTTGTACTTGTCCCAATCAAGAATTGGAAACTGTACATTTTTCTTCAGTTACATGTTAATGCCAAATGTTGTAATATTCATATCATTCTATCTTTTGACAACACTACTTGGAAA 1749 41.17 MAVSTASSILFLLLLIIFFVQSSFAGDERLQSFNSSSMADQYIKNEHAVDNPEEIASMVDSRIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTYNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALSCRRGFRC 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2138790 2145050 + XM_039032036.1 Bhi05g00119 34329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00119 429 PANTHER PECTATE LYASE 18-RELATED 38 426 IPR045032 GO:0030570
Bhi05g00119 429 SMART amb_all 155 352 IPR002022 -
Bhi05g00119 429 Pfam Pectate lyase 163 344 IPR002022 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 227 248 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 371 395 IPR018082 -
Bhi05g00119 429 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bhi05g00119 429 SUPERFAMILY Pectin lyase-like 59 424 IPR011050 -
Bhi05g00119 429 PANTHER PECTATE LYASE 38 426 - -
Bhi05g00119 429 Gene3D - 80 422 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00119 Bhi-Chr5:2138790 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi04g00601 Bhi-Chr4:14312324 Bhi05g00119 Bhi-Chr5:2138790 0 transposed
Bhi12g01516 Bhi-Chr12:49105909 Bhi05g00119 Bhi-Chr5:2138790 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00119 K01728 - csv:101207204 830.091