Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00235 CCATGGATCGGAATTCTTCATTTATTCGGTTGCTATATATAGGGCTAAATATTCAAATTTGTTCTAAGCAGAGAAAAACAGAAAGAAAACAGAGTTTCTTACTAATCCAAAACGAACCACCGTGAAAATTGAATTTCCGGTCAAATTTCAAATGGAATCCTCTTACTTTTCGTTCATCGATTCCGATTTCTCACCGGAAACTTCATTCGGATCAACTGAATCATCGTTCTCATGGAATGAATTTTTCTCAATCTCACTACAGGAAGAATTTATCGGGAATCAAACATCAGAATCGGAATCGAAAATCGTAGTGAAAGAAGAAATCGAAGTGAATTCGATTGATTTTGAGGAGGAGAAACATAGGAAGACGACGGAGAAGAGTTACAGAGGAGTGAGACGGCGGCCATGGGGGAAATACGCGGCAGAGATTAGGGATTCGACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCTGCTTTAGCTTACGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTGAATTTCCCGGTGGAAATGGTGAGGGAATCATTGCAGGATATTAAGTATCAATTGGAAGAAGGGTGTTCGCCGGTGGTGGCTTTGAAGAGGAAACACTCAATGAGAAGGAAGTCGTCAGCGGCAACGGCGGCGGTGGAGAAGAAGAAGATGAAGAAAAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAAGAACTTTTGATGCTAAGTTCATGTGAGAGTTTAAATCCTTTTTAATTTTTTTTGAATATTTTTATTTTTCATGGATTTGTGAGCTTCACAATAGAGAAAAAGAAAATGTAAATATATCCCTTTCATTTTTTTTCCAGTTATTTTCAATTACTTGTGAAAGTAAAAGATTTTAGGGATATAAAGTAAATTAAAGAGTAAAGTGAGGTTGTTGATGATAGTAAGTAGAATGGTCTTAGACCATCAAATTTTTATTTGTCAATAATGTAATTTTAATATAATTTTCTTGTTTGTTTGTTC 1048 37.12 MESSYFSFIDSDFSPETSFGSTESSFSWNEFFSISLQEEFIGNQTSESESKIVVKEEIEVNSIDFEEEKHRKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSMRRKSSAATAAVEKKKMKKKNNVVILEDLGTEYLEELLMLSSCESLNPF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4395753 4396800 - XM_039032414.1 Bhi05g00235 34445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00235 214 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Bhi05g00235 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 43 205 - -
Bhi05g00235 214 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677
Bhi05g00235 214 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Bhi05g00235 214 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Bhi05g00235 214 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Bhi05g00235 214 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Bhi05g00235 214 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Bhi05g00235 214 PANTHER DNA-BINDING DOMAIN 43 205 IPR044808 GO:0003700|GO:0009873
Bhi05g00235 214 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00235 Bhi-Chr5:4395753 Bhi09g01160 Bhi-Chr9:27316189 2.99E-55 dispersed
Bhi01g00737 Bhi-Chr1:13801605 Bhi05g00235 Bhi-Chr5:4395753 4.48E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1096 PF00847 AP2 1.10E-14 CL0081 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00235 K14516 - csv:101220325 322.398