Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00284 CAGTGAAAGCCCATGCAAGCAACAAACAACCAAATCCCATTTCCCCTTCAACTTTTCCCCAATCTTCTGTTTCTTGATCTTGTTTTTTCTCCTCAAATTCTTCATCGAATTGAATCAATCACGCTTCAAAATCACCAAAAATTTCCAGCTTCTTCTTCCATTTTTGTTTTTGTTTAGGCATTGGTAGAAGAAGAAGAGCAAAAAATGTTGGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAAATGGATTTGTAATCCCTGTGGAATCTCAGGTTGGTTCGGTGAAGAAGAAGAAGAAGAAGCAGACGACGACGAAGAAGAAGAAGAATACTGCAATTTCCAGGAGCTGGGTTTCGTTGGACCGTGAAGGTAGAAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATCAATGCGAGAGATCTTCGGCTTCTCGATCCTCTGTTGTCGTATCCTTCCACTATCCTGGGTAGAGAAAGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGTTACTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAATTCCCTATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTCCGTGCTTTAGAGGTGGCGCTTGAAGCAATTTGTAGTTGTCTTGATGCACGCACAAGGGAATTAGAGACTGATACATATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCTTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGCTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGACGATGACATGGCAGAACTTTACTTGTCACGGAAAGTAGCTGGCACCCCTGAAAGTGGCTCCGGGACTCCAATTTGGTTTCTTGCTTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGCGATTACCACTCGAGGAGAGAATGATGTTGAGGAACTAGAAATGCTACTCGAGGCCTACTTTATGCAAATTGAAAGTACATTAAACAAATTAATCACGTTGCGGGAGTATATCGATGACACAGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTGATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTATCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATTGTTTGTGCAACCATTTATGTGTCCCTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGAACGTTACACTTGTAAAATGTTTCCACGGTTTCGAGAAATTATTATTAACTCGAACCGAAATGATTCTTGAAGTCTGTCGGGAAGGACAAACATAAGGAAGGTAATGTCAAGTTATGGTTGAATCAAGTGATCTTCTAGACATGGAGTGTCTTTTTTGACGGCTTATCATTTTTTTCCTCTATGGTTTTATAAGTTAATTAGGGAAAAGGGGTGGTTTTCAAACTATTTAGGAAAAATGGGTCGAAATTTTATCTTTATTGGAATGCGTCGGTTGAACGGACGCATTTTAGAATATTTTAATAATATGTTGACCAGACGCATTCAGTTAATTAAATAAAAAAAAGTTAATTAGACAATGTCAA 1798 39.88 MAGNGFVIPVESQVGSVKKKKKKQTTTKKKKNTAISRSWVSLDREGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSLYQGQGEEEEPSTTQNELAENEFPFEFRALEVALEAICSCLDARTRELETDTYPALDELTSKISSLNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKMSKTSRASAITTRGENDVEELEMLLEAYFMQIESTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5756911 5762490 - XM_039032785.1 Bhi05g00284 34494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00284 399 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 399 IPR039204 -
Bhi05g00284 399 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 6 399 - -
Bhi05g00284 399 Gene3D - 20 110 - -
Bhi05g00284 399 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 335 386 IPR045863 -
Bhi05g00284 399 Gene3D Magnesium transport protein CorA, transmembrane region 336 390 - -
Bhi05g00284 399 CDD Mrs2_Mfm1p-like 39 396 IPR039204 -
Bhi05g00284 399 Gene3D Magnesium transport protein CorA, transmembrane region 113 329 - -
Bhi05g00284 399 Pfam CorA-like Mg2+ transporter protein 281 384 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bhi05g00284 399 Coils Coil 202 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00284 K16075 MRS2, MFM1; magnesium transporter - csv:101220452 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00284 Bhi-Chr5:5756911 Bhi12g02261 Bhi-Chr12:72336679 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G16010 84.9 3.3e-168 589.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi12g02261 . 1 366 MRS2 Gene Family AT5G64560 81.5 1.3e-160 563.5
Bhi05g00284 . 1 372 MRS2 Gene Family AT5G64560 69.2 3.1e-130 462.6
Bhi01g01584 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi01g01583 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi04g01155 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01156 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01157 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi11g01453 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01451 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01452 . 13 371 MRS2 Gene Family AT2G03620 53.4 2.9e-89 326.6
Bhi01g01584 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi01g01583 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi12g02261 . 1 328 MRS2 Gene Family AT5G09690 75.9 1.6e-127 453.4
Bhi05g00284 . 1 334 MRS2 Gene Family AT5G09690 64.1 4.1e-107 385.6
Bhi11g01453 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi11g01451 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi12g02261 . 23 288 MRS2 Gene Family AT5G09720 68.0 2.1e-89 326.6
Bhi05g00284 . 36 294 MRS2 Gene Family AT5G09720 60.9 3.2e-74 276.2
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G80900 84.6 4.1e-166 582.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi08g00117 . 18 455 MRS2 Gene Family AT5G22830 69.5 1.2e-157 553.9
Bhi08g00116 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
Bhi08g00115 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00284 Bhi_Chr05 FPKM 0.645363 0.433703 0.878607 0.747468 1.783193 2.359968 1.828785 0.644771 0.522616 0.820352