Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00448 AATCGGTTGGTAGGTGTCCGCTCGAACGGCGTCGTTTCATCTCCAATCTCCCTCTTTCTCAACGCTCTTCTCCTCTTTTCCTGAAACCGCCTCCGAAGACCTAGATTCCCTTTTTTCATCTTCTTCGTCCTCCATCTCTATGTCTCCTACTCAGAGTTTATGATTTCATTGGTATGTTAGCTGCTTGGGTATAATTGGATTGATTTGGTAGCTGCAGAGAATGGGGAAAAGGAGCGGCTTGTACAGAATGACCGCTGACTGCAGACAACGGGTTTTTGAATTTTCTCAATTGCATGGCTTATCTAACCCCTGGATAGTGAAGAAGAGATTTGTAAATATTCTAATAGTTGATCTTTAGGATATAGTTTGTAGATAAGGATTGTTCTTGTAGATGAATATGGAAACAGAGTTAACTAAGGTTCTGCATAATGGCCAAAAGATTGTTGTGGGTTTGAAGAGGAAAAGGGAAAATCAAGGCACGGCACATGCTGGAGCTGGCTACAAGGCATTTTTGTCCAAGTTGACCTCATCTAGGAATAGACATGCCAAGTCCAAGAGACTCGATGACTGTGAAGTCAGTTGTGGGCCAAACTCAAGGAGATCTTTTCTTAGAAACTATAAAAATTTTAGCAGAAGTGGACTTCCCCAGAGGTTTTTATATTACGAAGATGGGGATTGGGTAGATTACCCTCAGATAACTGTCAAGTTGATTAGGGAACAGTTTCAGATTAAAAATGCGGCAATTGAAGTTGAATTTAATGGTCGTCATTTGCTGCTAGATGCTTTGTATATGATCCAAGTGGAACTGAAAACAGCTATTCAGCAGCACATTGCCTGGATTGATGACAATGGTCGATGTTTCTTTCCAGAATTTTATTCGGGTGACAATGTGATGCATCAGTTCCACCAGTATGGACTGGAAGATGCTTCTGCTGTTGGATTATCAGACCATGAAGGAATGAGAGAGATCAATTTGCATCTTGAAATTGGATTAACTGAAGCAAATATTTCTCAATCAGAAGAGTATATTGAAGAGTCAAATAGAGATACCAAGATATCTAATATCAAAACAAAAACTTATGATAATGGTGGGGATTGGGAAGGCAGTGAAACTAGAAGTCAGAAACCAGCTGCTGAAACGCAGGAGGCTGTTGGAGGAATAAAAGAGATTGATTGTTATACAACGTCTCAAATTGAATCAATTCATTCAACTGTGAATTCGGATGATGTAAAAAATATGTTCTTAATGAGCATGGAATCTATTAAGAACGTTGAAATACTCGAGGTCAAACGTTGGTCTAGTCCTTTAATGCAGGATAGACTGGATCTGTTTCAAAAACAAATAGAGATAACCAAGAAGAGTCGTGGGAATGCCAATGTTCAGTATGGTTGGCTAGCTCTGAATAAGGATGTTTTATCTGGTAGAATGCCATATGGGGTAGGTCATTCTGGACCGAAGCTTGCATCCTCATATAGTGTTCATCTTTCACCTTCAAGCTGCGCAAATCTTAGTGCAAGCTATTGCGATGATGATGAAAAAGGGGTTAGATACATAGCGTTCTGTCATGTCATATTGGGAAATGTGGAAGTTGTCGCTCCTGGATGTGAACCATATCATCCCAGCTCTGTAAACTTTGACAGTGGAGTAGATGACCTTCATAATCCAAGTCAATATTTAGTTTGGAATGTGAATATGAAAAGCCACATTTTTCCAGAGTATGTTGTAAGTTTCAAGATATCATCAAGTCCTCTTGAACGTGGGCTGCAGGACCAGTTGCAGATAAATTGCTCATCGATTGAATCAGAGGAGGATTGTGTGTCTTCGCCAGCTCCTGAAAAGAGATGCTCGGAAAAGGTTGACCATGGATCTAGCTCTCTGAAGATTCCAAAGTCCCCCTGGATGCCCTTCTCAATGTTGTTTAATGCCATTTCAGAAGACGTTTCTGTCAATCAAATGAAATTGGTGTATGGTAATTATGGGTTATTTAGAGAAAAGAAGATCAGTAGGGACGAATTCATAAGAAGGTTGAGGTCCATTGTTGGGGATCGGCTACTGAGGTCTACACTAATGAGTCTTCAGTGCAAGCTACCTGCAAAGTCTCCATGTACTTTCAAAGTTCCGAAGGAGAAAGAATGTTGAGGCTGTTGGTAAGAGTCTGTATTTAGGTGCTTTCCGTCACGGGGGTTGCTAATGTACATGGTGTCTTACTGTTATTTTGCCTTTGAATTTGTCGACCTGATTTGTGACATCTCGATATAGGCTTATATGAAACAGTTACTATTTCCAATGTACCTCAGTTAATTGCTTATTTATGTATACTCAGTCAATTGCTTCAATTCTTA 2343 40.03 MNMETELTKVLHNGQKIVVGLKRKRENQGTAHAGAGYKAFLSKLTSSRNRHAKSKRLDDCEVSCGPNSRRSFLRNYKNFSRSGLPQRFLYYEDGDWVDYPQITVKLIREQFQIKNAAIEVEFNGRHLLLDALYMIQVELKTAIQQHIAWIDDNGRCFFPEFYSGDNVMHQFHQYGLEDASAVGLSDHEGMREINLHLEIGLTEANISQSEEYIEESNRDTKISNIKTKTYDNGGDWEGSETRSQKPAAETQEAVGGIKEIDCYTTSQIESIHSTVNSDDVKNMFLMSMESIKNVEILEVKRWSSPLMQDRLDLFQKQIEITKKSRGNANVQYGWLALNKDVLSGRMPYGVGHSGPKLASSYSVHLSPSSCANLSASYCDDDEKGVRYIAFCHVILGNVEVVAPGCEPYHPSSVNFDSGVDDLHNPSQYLVWNVNMKSHIFPEYVVSFKISSSPLERGLQDQLQINCSSIESEEDCVSSPAPEKRCSEKVDHGSSSLKIPKSPWMPFSMLFNAISEDVSVNQMKLVYGNYGLFREKKISRDEFIRRLRSIVGDRLLRSTLMSLQCKLPAKSPCTFKVPKEKEC 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9392029 9402338 + XM_039031872.1 Bhi05g00448 34658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00448 582 MobiDBLite consensus disorder prediction 229 250 - -
Bhi05g00448 582 ProSiteProfiles PARP catalytic domain profile. 248 468 IPR012317 GO:0003950
Bhi05g00448 582 ProSiteProfiles RST domain profile. 497 568 IPR022003 -
Bhi05g00448 582 Pfam RCD1-SRO-TAF4 (RST) plant domain 499 563 IPR022003 -
Bhi05g00448 582 ProSiteProfiles WWE domain profile. 74 149 IPR004170 -
Bhi05g00448 582 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE RCD1-LIKE 6 580 - -
Bhi05g00448 582 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 6 580 IPR044964 -
Bhi05g00448 582 Gene3D - 272 449 - -
Bhi05g00448 582 SUPERFAMILY ADP-ribosylation 288 449 - -
Bhi05g00448 582 MobiDBLite consensus disorder prediction 229 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00448 - - - csv:101213014 1027.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00890 Bhi-Chr4:22407874 Bhi05g00448 Bhi-Chr5:9392029 1.59E-62 dispersed
Bhi05g00448 Bhi-Chr5:9392029 Bhi07g00956 Bhi-Chr7:31948466 2.14E-126 dispersed
Bhi05g00448 Bhi-Chr5:9392029 Bhi05g00449 Bhi-Chr5:9392035 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0489 . . . . . . Blo03g00881 . . . . Bpe11g00316 . . Sed01g4140 . . . . . . . . Bhi05g00448 Tan07g2008 Cmetu06g2068 Lac11g2449 Hepe06g0991 . Lcy12g1971 Cla09g01093 Cam09g1147 Cec09g1156 Cco09g1172 . . Cre09g1110 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007308 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00448 Bhi_Chr05 FPKM 10.307487 13.832417 5.88487 4.976497 16.468069 12.7353 14.063689 6.491101 6.510451 5.961296