Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00477 GCATTAACACATTCAAACACCTCAACACAAAAAAACAAAACACAGAGAACTTTGCCATTTCCATAATCTTCGCAACTTTGCAGCTATGAAATCCGCTCTCCTCCGAACCGGCTCCGTTCCCGTCCTCTCTCCGGCCGCCGCTTCTTTCTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCTACAAAAGTTCCGTTTCATCTCCCAAAATCTCTCTACATTTCGAAATCAATCATCGCAGAGGAAAGAATTCCAGTCGTATCCGAAGAGCAGCATCAGAGAGCGACATCACACAATCGCTGCACGAGGTTTTAAATCCACACGATCAATCCAGTGGAGTGAGATCTCGATCTCGATCTCGATCTCGGTCGTTTCCTTCCGGAATTCCAGAGGAGGAGTTGCTGAACGAGGATGAATCCGACGGTGATTCCATGAAGGATGGCGTTGATTTTGTTTCAGATACGTTTTCAAACGGAAGTAATGACCGTAGTAAGATCGGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCGAGCGATGCTCTGTTACTGAGAAACTACGGAAAATTCTTACACGAGGTGGTGAAAGATACGATACGAGCGGAAGAATGCTACAGCAGAGCAATACTCGCAAGTCCAACAGACGGTGAATTACTGGCTTTGTATGGAAAATTAGTATGGGATACTCAAAGAGACAAACGAAGAGCTCAATATTACTTCGATCGCGCCGTCTATGCTTCTCCAAGCGATTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTGGAAGACGATGAGGCAGCAGCGGCGGCGGCGGCGGCAGCGGAGGCTCCACCGGCGGCTGTGGTATCGGCGTATTGATGTGGATGAAATTGGTTTTTGGAAATTAGGAGGGGAAGAGGAAGAACTAACGAAGGAAGTGTGCACGTGATTTGTGCATGGGCCATTTTCAAGAGGGAATAAGATTACGTTATGGGCTGCTGTCAGTTTTCTATTTTATTATATTTAAAGCTCTTTTATATATTTATATTTTTCTCTTTTGTAAAAGTGTATAATCATAATTTTTTGGAAAAGTTTTATCGATGTGTACTTAACAAAGTTAACATTCGATGCATAATGCAAAATGCAGTCTGAATAAAAAGAATAACTCAATTTTTTTTTTCAAAGGTCAAACTCTTTTTTCCTGTTTTTTTAAAATTTAATTTTCCTTTTGTGTTTGGAAAATGGCAACATTATTAAGAGATCATTATATTAGTTGTTTGAGTTGAAAAATTATATATTTCTGTATTAGTTACCATAGAGAAAAAGTCTTTTTACATTTTATTATTCCCTTCTATAGGTTATATGTTATAATATAACATATAATTAGTCATTTTAAGTGGGTAGCTTTTTGAAAAGGAGAGGATTCCCTCCTGGTTGAGTGGCTTCTTGGCCGAAAGAGAAAAGACAAATGAGTTTTGGATTTTTGGATTTTTGTTAGTGATCGATCTTCAAAACTTCTACCTCTCTATTTAAAACTTTCCCTCATTCAAAAATAGTCAGAGTCCACCACTCCTGTTCGTGTTTTCGAGGGAATCTTGAAGAAAAGTCTTCAAAGGTAAGGTTAACCTAATTATATAGCATGCAGTAATTTATGTAAATGCATTACTGTAAAATTTACATTCAGTGAAAAATGGGATTTGGGATGATCTTTCTTCCGCTCACGATTCCCTTCAATTTAGGATCCTTCAATTGTATAAGAGCCAGGTTGTTGGTTTACTGATCCCAAATTCCATTTTAATTCCATTTTTTTAATTGATTTTACAGTGATGGTGGGTTTTACACTTTCTGCATTTTATTTAAAGTTCATGTGATGAATGGTTTTGAATTTGGTTTTGTTGATGGATGTTTTGGGATAGGATACTTATATTTATGGCTTTAATTTCATTTACAAAAAGGCCCCTATTTTGGGCATAATTTTGTTAGAGTCTGTATGCATTGTTTTGAGTCGCTCGTGTTGTTTTTGGGAGCTTCAAAGAAGAAATTCAGAGCACTGCTGTGATGAAGAAGAAAGTAGATCTACAAGATCGTGTAGTAGTGCCACACGATCAGATAACTTTTGTTAAACGATCGTGTAGTATTTGCTACACAATCGTGTAGCTAATGCTACAAGATTATGCAGCAAGTTTTGCAGCTCGTACAACAAGTTTGCTACACGATCATTGTAGAGAGTTCGTTGAAGGGCTGTTTGGTTCAAGCGGTTCAAGGTCTAGTTCACCTATATCGAACTGGATGGCTCTTATGCTATAATAATTAACCTTTTAAGTTTCCTTTTAGGTGTCCTATCCCGGTCCATTAACTGTTTATATTAAA 2365 38.27 MKSALLRTGSVPVLSPAAASFSFSNNKPLYGVFSCYKSSVSSPKISLHFEINHRRGKNSSRIRRAASESDITQSLHEVLNPHDQSSGVRSRSRSRSRSFPSGIPEEELLNEDESDGDSMKDGVDFVSDTFSNGSNDRSKIGAYYEELLKLNPSDALLLRNYGKFLHEVVKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPSDCLVIGHYAHFLWQVEDDEAAAAAAAAAEAPPAAVVSAY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10091729 10094281 - XM_039032433.1 Bhi05g00477 34687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00477 262 SUPERFAMILY TPR-like 142 246 IPR011990 GO:0005515
Bhi05g00477 262 MobiDBLite consensus disorder prediction 65 99 - -
Bhi05g00477 262 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 243 - -
Bhi05g00477 262 MobiDBLite consensus disorder prediction 57 122 - -
Bhi05g00477 262 Gene3D Tetratricopeptide repeat domain 128 256 IPR011990 GO:0005515
Bhi05g00477 262 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00477 - - - cmax:111466874 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00477 Bhi-Chr5:10091729 Bhi09g00021 Bhi-Chr9:413605 1.68E-30 dispersed
Bhi05g00477 Bhi-Chr5:10091729 Bhi09g02240 Bhi-Chr9:63075420 5.58E-07 transposed
Bhi05g00477 Bhi-Chr5:10091729 Bhi09g00020 Bhi-Chr9:413431 1.68E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g687 . . . . . . Bma07g00922 . . . Cma02g01623 . Car02g01382 . . . Cpe05g00169 . . . . . . . . . . . . . . Cone8ag0479 . . . . . Chy04g00108 . . Blo19g00198 . . Bpe08g00824 . . . Sed01g4122 Cmo02g01668 Cmo19g00241 . . . . . Cpe15g00202 Bhi05g00477 Tan07g1993 Cmetu04g2583 Lac11g2429 Hepe06g1786 . Lcy12g1959 . . . . . . . . Csa03g04595 . Cme04g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00477 Bhi_Chr05 FPKM 4.654341 4.177383 5.791197 7.787559 5.711489 3.189174 5.663634 7.514336 5.816107 9.762455