Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00483 TCAATTCTGCCCCTCTCACGTGCAACCTTATATACTTCTTTCCTTTTACATTACCCTTTTAACAATTTTACAAATTTCTTCTTCCCATTCATCTCTTTCTCTCTACAAAACCAAAGGCAAAAGCTAAAGTCCTCAAGAAAGGAAGGAAAAAAAATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGGACGCCCTCCGTGACTCGTCGGAGAATAATACTTTACTCTCCGGCGACAAGTGCTCGAAACCCAATTCTCGAAAACGCCGACCGAGCGAGGCCCAATGCAACCCAACGACACCGGCGCAGCAAGGGAAGAAGAAGAGGAAGAGAAAAGCAAAGGTTTGCAAGAACAGAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGTCGTAAACAAATGAATGAACATCTTTCAGTCTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTAAAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTTAAGGATGAGATTGAGAATGAATGAAAATAATAACAATAAGTTGTTTTCATTTGTAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGTTCTCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCACAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTTACTGATTTCCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAATTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTATGTTAAAATGTAAACAATTCAAAAAAAAGAAAAAAGAAAAAAAGCTAAGAAGTTTGAAAAATGGAATCAACCAAACCATTAAAATGCCAAGTTCTCTATGTGTGTGTATGTGGCTTGGTTTGATGCAATTTGTAAATGAATGTGTTTTTATGTAAGTTGATTATTGTTTTGTAGCTATCAAAGGTTTGTCTTTGTATGCTTTAGTTTCTTTTTTTCTTGAGACCACAGAAAAGGAAGAGAGGGACAGATGATAAGAAAAAGTTGTCAAAGGGATTGGCTTGGATTCATCTCTTTCTTCCAATG 1359 37.82 MSLDALSSNDLFNFIIYDTISATPDALRDSSENNTLLSGDKCSKPNSRKRRPSEAQCNPTTPAQQGKKKRKRKAKVCKNREEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLKILQQEVDHHQEQEINEDLRMRLRMNENNNNKLFSFVSLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10178743 10181668 + XM_039031741.1 Bhi05g00483 34693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00483 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 150 IPR036638 GO:0046983
Bhi05g00483 302 PANTHER MAX DIMERIZATION, MAD 1 301 - -
Bhi05g00483 302 SMART finulus 91 142 IPR011598 GO:0046983
Bhi05g00483 302 MobiDBLite consensus disorder prediction 28 84 - -
Bhi05g00483 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 136 IPR011598 GO:0046983
Bhi05g00483 302 MobiDBLite consensus disorder prediction 28 42 - -
Bhi05g00483 302 Gene3D - 77 178 IPR036638 GO:0046983
Bhi05g00483 302 PANTHER TRANSCRIPTION FACTOR BHLH71 1 301 - -
Bhi05g00483 302 Pfam Helix-loop-helix DNA-binding domain 86 137 IPR011598 GO:0046983
Bhi05g00483 302 Coils Coil 133 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00483 - - - csv:101210413 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01450 Bhi-Chr1:29632140 Bhi05g00483 Bhi-Chr5:10178743 1.71E-26 dispersed
Bhi04g00791 Bhi-Chr4:19588772 Bhi05g00483 Bhi-Chr5:10178743 2.10E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g680 . Blo03g00120 Bda06g01272 Bda08g00632 Bpe05g00526 . . . . . Cma02g01618 . Car02g01378 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00104 . . . . . . . Bma05g00711 . Sed01g4116 Cmo02g01663 Cmo19g00245 . . . . . . Bhi05g00483 Tan07g1987 Cmetu04g0326 Lac11g2424 Hepe06g1782 . Lcy12g1955 Cla09g01111 Cam09g1166 Cec09g1173 Cco09g1188 . . Cre09g1126 . Csa03g04599 . Cme04g00128
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007772 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 0 1 4 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1134 PF00010 HLH 1.00E-10 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00483 Bhi_Chr05 FPKM 50.60099 50.431763 107.343895 110.179337 50.920853 44.481178 48.61031 98.796738 93.008995 102.279465