Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00527 TTCTTCTCTTCAGCTCTGAACCGAAAATGGAGTTCCTGGACGAAGATGCGAAGCCCAGGTTCCTCTTCCACTCTCGCGCCAATCCATCTTCGGCGACGGAGCTCCAAACTGAATCTCAATCCAGCAAGCTCTTTGTCTCAATCACCGTCGTAATCTCTTCCATTTTTCTCATTCTCTCAATTTTGTTCGTTCAATTCGAACCATTCAGATCCCTTCTCATCTGGCTTTCTCTCTCGCTTCTTCTCGGCCCTTTCGCCCCAATTTCCCTCACCGGCGGCGACATTCGTGTCGGTCGAGGTCCGATTCTCGAAATTCCCAACGAAGAACCCGAAGTAGAGGACGATGCCAAGAAGAAACCCGTTCAAAAGCGCTCAAAACCGCGTAGATCCGAGGAAATCGCGGTTGGCACAATCGAAGTTGCTGAAAAAGCCTCTTCAAAAATTGAGAACAGGAATGGAGGAGTTTATCAGAGTAATAAAAATGGAGTCGATTTTGCAATCGAGGAGGCAGAATGGGACGAAGCGGAATTAGGGTTTTTGAAGAAGCAATTGACGAAACATCCTGTGGGGAAACCGAGACGGTGGGAGATAATTGCAGAGGCGTTTGGTGGAAGGCATAAAGTGGAGAATGTGATTAAAATGGCTAAGGAAATGGGAGAGAAGAAATTAGGCGATGAGGATTCGTATGCTCAATTTCTGAAGAAGAGGAAACCAATGGATAAGAGAATTGAGAACGTCAATGAAGAAGGTGCCACCGCTGTCGTCGACGGTCAGGTCGCCGGTTGGTCTTCTGGTGAAGACATTGCATTGCTCAATGCTTTGAAAACGTTTCCAAAGGATTCGGCATTGAGATGGGAGAAAATTGCAGCTGCTGTTCCAGGGAAGACGAAGGCAGCTTGTATGAAGAGAGTTGGGGAATTGAAAAGGGATTTTCGAAATTCTAAAGCTGCTAATGACATCTGAGAGAATAGAAATGGAGTTTATCAAAGATCAAAGAGAGGAACAAAGCTTCTTTGAAAAATGAATCAGCAGAGAGATCATCACAGAACAAAACAAGAAGCATTCAACTTAGAGAAATACAAAATATAAACTTACCGTTGCTGGTGGTGGACGACTGGCGAGGCGATGTTGAGATGGATGATGAAAGGGAAGGGTCTACAAGAGGCAAAGAAGAAGACATGAATGTTGATAGAGAGATGTGTTGATAGCGGAAGATTGAGATTGAATGAGACGCACTGTCAACTGCAGGTTGAAGAAGACGAACTGTCGATCTGTCAATCGGTATAAAGTTGAAGGAGAAGTAGAGGCTCGGGCTGCTCTTTGAGTATGTTGCCGATTAAAAGTTGAAGGAGACGTAATCTGAACAATTGTTCTTGAAAGAAACACTAAAATGATAGGTCGGTTCAGTTTAGGTCAAACTGAATTTTCTCCCCTTGAATCAAAGAGTTGCCGGTCGATTCCTTAAACACCTAATCCAATCCAACTCTTATGATTTAGTTTGGGTTGATCAAATTTTTCGAGTTGTCGAGTTTTTTTTATATCAAATGATATCCATATCCTCAAATATATGTAGGTTGGTAGGAAGATTTCTAA 1592 43.34 MEFLDEDAKPRFLFHSRANPSSATELQTESQSSKLFVSITVVISSIFLILSILFVQFEPFRSLLIWLSLSLLLGPFAPISLTGGDIRVGRGPILEIPNEEPEVEDDAKKKPVQKRSKPRRSEEIAVGTIEVAEKASSKIENRNGGVYQSNKNGVDFAIEEAEWDEAELGFLKKQLTKHPVGKPRRWEIIAEAFGGRHKVENVIKMAKEMGEKKLGDEDSYAQFLKKRKPMDKRIENVNEEGATAVVDGQVAGWSSGEDIALLNALKTFPKDSALRWEKIAAAVPGKTKAACMKRVGELKRDFRNSKAANDI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12424369 12427759 + XM_039031785.1 Bhi05g00527 34737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00527 311 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 309 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Bhi05g00527 311 PANTHER TRANSCRIPTION FACTOR MAMYB 1 309 - -
Bhi05g00527 311 MobiDBLite consensus disorder prediction 97 121 - -
Bhi05g00527 311 MobiDBLite consensus disorder prediction 102 121 - -
Bhi05g00527 311 ProSiteProfiles Myb-like domain profile. 253 294 IPR001005 -
Bhi05g00527 311 CDD SANT 253 294 IPR001005 -
Bhi05g00527 311 Gene3D - 158 215 - -
Bhi05g00527 311 Gene3D - 247 309 - -
Bhi05g00527 311 SUPERFAMILY Homeodomain-like 252 295 IPR009057 -
Bhi05g00527 311 SMART sant 159 212 IPR001005 -
Bhi05g00527 311 SMART sant 249 301 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00527 - - - bhj:120077769 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00525 Bhi-Chr5:12424369 Bhi05g00527 Bhi-Chr5:12424369 0 dispersed
Bhi05g00527 Bhi-Chr5:12424369 Bhi07g01071 Bhi-Chr7:34561193 1.13E-06 dispersed
Bhi05g00526 Bhi-Chr5:12424369 Bhi05g00527 Bhi-Chr5:12424369 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi05g00527 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004847 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1142 None None None None Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00527 Bhi_Chr05 FPKM 0.234973 0.205015 0.377858 0.595904 40.473171 43.746986 37.818367 0.0 0.0 0.173192