Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00566 TGTAACGCAAATTTGCTATAACTCCAAAATCATCGATTCATCTTCCCTCTGCATGCTTTTCTCTTCCCGCCCTTCTCTCTCCTATGCTTTTTTTTTTCCTTTTTCTCTATCATACTCATCCACATTCTTCCCGCTTAATCTATATGAACAATACCCAATCATTTTCTTCGGATTTCTCACCCATTTGTTGTGTTTCATTCCATTCACATTCTGTTTCTGTGAACTTTGTTTGGTTTTTGTGTTTGATTTGAACGTAGTGTGAAGATGGTGGACTATAGTTTACCAGTTTCGAAGAGGACGCGGCTAAGACGAGCTATGGCTGGAATGGAGGATTTGGAGCAGAGGAGGAAGCGGAGGAAGAAGAACAGGGCGGATTCCGCTAGTGATAATGTTCGAGGTCGGGCTTCGAGTGGTAAGAGGGTCAATGTGTTTGAACATTCTAGTGTTAATCGAACAATGGAGGTGGATCCTGTTCGTTTTTATGATGATAGTGATGGGGATAGTTTAGAGGAGATTGATGCTTTAACATTTGGTAGAGAAGGTGGGGATTCGGTTACATTTGTAGATTCTGAGAGTTCGGGGGGATTGAAGAATGTTAAAGAACGTAGTAAGAAGGGGTTTCTGAAAGGGAATATTGATATAATTGATTTAGAGGATGAAGTTATTTTGTCTGATGATGATGACGACGAGGGTTTTGGTTTTGATTCTGTAAATTCCATGTGTTCAATTTCCAAGTCTGCTACCGCTGCTGCCCCGAAGGATGGGGGTTTTGTTTGTTTTGATTCGGACAACGAAGAAAATAGTAGCGGCTTGCTTTCTTCTGGGAAGGGGAAAGATGCTTTAGAAATATCTCCGGATAAAAGCATGGGGGAAAGTGATTGCTTGAACTCTAATGGTTGCTCATATGAGACCGAGCCAACGTGTTGTTCTGATGACGCCGTAGATGAGTCCACTGAATTGAGAGCATCATCAAGTGAAGAGGAGTTTGATGACTCCAGTGATAGAAATTACGAATTAGAAGAATCACACCAGTCAAGTTCAGAGTCCTCTAGTTCAGAAGATGGGAAGAGTAATAGAAATTACTGTGCAGAAGTTGGAAATAGAAGGGAGAGGAAGGAGAGAAGGAAAAGGGTAAATTTGATTGAAGGTGGATTAAGGAGGAAAGCATATGGCTTAGACATATTTGTTGATTTTAAGGAGGATGAACATAACAAAAATGTTAAGGTTGGTGCAAAAGTTAGCTGTATTGCACGAAGAACTCGTTCATGCTTTGGTTTTAGAGCTAGGAAAATAAATACTGATCTTGGAACTGTCAGTCAGCCAGTCTGTGTGGACGAGGAAGGATTAGATTTTCAGTGTGACAAGAAAGAAATAGGTTCTTCATCAAGGCATGACAGTGGAGATTCTTGCGATAGTGATAGTACTACTGATGATGAAGTTTACAAGCCATGGGCCTGGAGTAGTAGTAAAAAGAAAACTCAGTTCAATAATCAAAGTGATGATGGTTTCTTATCAGAAAAGAAAGACGATGATACAAACAAGGTCGAGAGTTTTCGTGTGGGGAGTAGACTTTGGAATAGTAAAAGTTCACCTAAAACGGATAAACACAATAGGAATGAAGATTTTCAGAAGGTTCATCCAAAAAATGGCCATGAATTTCATGATATTATTAAAACAAAAGGCCGCAGTGTGCCGAAAGGTATTGATGTTTTCAATATTCTTGTTGATTCCATAATTGCAGACAAAGAACTGCCTTCAGATGAGTTAGATCTTTCTACAAGTCAAGTCTCCCATATGCCTCTTCCTTTGAAGTTTGGATTGGTGGAATCACGTCTTCCAGAGAAGTCAGAAGAAGAAAAAGAATTGGACAAACTCTGGGCTGAACTTGACTTTGCTATCAGATCCAGCGAGATTGGGCTGGTGGATTCTAACACAGTTGAACACGAGGATGCCTTTCCTTCAAAGCCTGAGCAAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGACGAACAAATTGGACTTAGATGCAGATGCTGTTCACATGTCAAATTGGAAATCAGAGATATTGTACCTTCTTTTGATACAAATCCACATGGAAAGTCACAGAAGAGGGAATCTGGCTCCTTTGAGCGTGTTAAATATGATAACCTTCAACAGGATTTTGATTGCGACCCCCATGACGGATCTGATTCACGATCTCATTTTGGACGCACGGTGTGGGATATCATTCCTGGTATAAGGAATAGCATGTACCCACACCAGCGTGAAGGCTTCGAATTTATTTGGAAAAATATAGCCGGAGGAATCTATCTTGATGAGTTAAGAGAAAAAGGCAGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTAATTTTCTTCAGACGTATATGGAATTAAATCCAACATGCCGGCCTATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAATGTGGGCATTCCTTTTCATAACCTGAATAAGCGAGATTTCTCTTTTCACGAGAATATTTCAGCCCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAGATGTCGAAACCATACGGCTTGTAAAAGTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGGAATAATTCTAAGTGTGCTAAAGTAAGAAATGTCCTTTTGGAGCTTCCTGATCTTGTAGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAAACAGAAAGGCGCATCATTCTTTCTGGAACTCCGTTCCAGAATAATTTCACTGAATTTTATAATACACTTAGGTTGGTGAGGCCAAAATTTGCAGATGAAAATAATTCTGGAGTCGATGATTGCATGGATAAAAAGCGTGGACGACCAAAAAATATCTCAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAACTGGAAAGTGCTGAACTGAAAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTGTACAGGGGCAGCATACTACAGGAGAAACTTCCAGGGTTGAGGAAATCTACAGTTATATTATGGCCAGCAGAGCTGCAGAAGAGTTTTCTCGAGAGAGTTCAAGCAAGGAAACATTCCTTTGAAGTGGAATACGTTGAGTCCTTGATCTCTGTGCACCCTTCCCTGATACTGAAATGTGATAAAGGAGATTGTGAAGTTGACAAGGATATGTTAGAGAGGTCTAGATTGAATCCTGAACTAGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTTTGAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATACATTGAACCATTGTCCTTTATAGAAGAGCATCTTAAGTTTCATTTTAAATGGACCGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGTGAGATAAAGAAACGGCAAGCATTAATAAATACCTTTAACGATCCAACAAGTGAAGTTAGGGTATTGCTTGCATCTACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGAGTAGTTTTACTTGATGTTGTATGGAATCCTTCTGTGGAAAGGCAAGCCATATGCCGAGCCTATAGACTCGGGCAGAAAAAGGTTGTTTATGTGTATCATCTCATTACCTCTGGGACAAGGGAAGAAGAGAAATACAGTCGACAAGTGGAGAAAGATCGACTGTCTCAGTTAGTTTTTTCTTCTGAACAGAACAGTAATGAAGTCAAAGTATCATCCACAGATCTGGATGACAGAATTTTGGAAGCTGTACTTCAACATGAAAAGTTTAAAAAGATGTTCCAAAAGATAGTATACCAATCAAAGGAGTCCTGCATAAACGAGAATTTCGGCCTGGCAGACAAGGAGTGAAACTCATTCTGGGTTTTGAAGTTCGATGCACTTTTGGAAGTTTTATTAGCAAGAAGACAGTTAATGAACAGGATAACTTTTGGGCACTGATTTTTGTGGCCTTGCAACAATACAGCAGTACCGTCGTAAGCATCGCTAACTTGCATTTCATTTGTAATGGATCCATTAGATGGGGTAAATGCAACTGTTTGCTCCGTCTTTTTTGGAGTGCTTAATATTTTTTGAAGCAGCCATTCAAA 4226 39.97 MVDYSLPVSKRTRLRRAMAGMEDLEQRRKRRKKNRADSASDNVRGRASSGKRVNVFEHSSVNRTMEVDPVRFYDDSDGDSLEEIDALTFGREGGDSVTFVDSESSGGLKNVKERSKKGFLKGNIDIIDLEDEVILSDDDDDEGFGFDSVNSMCSISKSATAAAPKDGGFVCFDSDNEENSSGLLSSGKGKDALEISPDKSMGESDCLNSNGCSYETEPTCCSDDAVDESTELRASSSEEEFDDSSDRNYELEESHQSSSESSSSEDGKSNRNYCAEVGNRRERKERRKRVNLIEGGLRRKAYGLDIFVDFKEDEHNKNVKVGAKVSCIARRTRSCFGFRARKINTDLGTVSQPVCVDEEGLDFQCDKKEIGSSSRHDSGDSCDSDSTTDDEVYKPWAWSSSKKKTQFNNQSDDGFLSEKKDDDTNKVESFRVGSRLWNSKSSPKTDKHNRNEDFQKVHPKNGHEFHDIIKTKGRSVPKGIDVFNILVDSIIADKELPSDELDLSTSQVSHMPLPLKFGLVESRLPEKSEEEKELDKLWAELDFAIRSSEIGLVDSNTVEHEDAFPSKPEQVDLCLRGDHQLILDEQIGLRCRCCSHVKLEIRDIVPSFDTNPHGKSQKRESGSFERVKYDNLQQDFDCDPHDGSDSRSHFGRTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELREKGSLNNGSGCIVSHAPGTGKTRLTINFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWNVGIPFHNLNKRDFSFHENISALKFLMQASPSGQDVETIRLVKVFSWKKEKSILGVSYRLFERLAGVRNNSKCAKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFYNTLRLVRPKFADENNSGVDDCMDKKRGRPKNISRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKSFLERVQARKHSFEVEYVESLISVHPSLILKCDKGDCEVDKDMLERSRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSQLVFSSEQNSNEVKVSSTDLDDRILEAVLQHEKFKKMFQKIVYQSKESCINENFGLADKE 1240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13974033 13980988 + XM_039033021.1 Bhi05g00566 34776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 1 57 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 255 270 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 180 206 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 15 40 - -
Bhi05g00566 1240 SMART ultradead3 661 915 IPR014001 -
Bhi05g00566 1240 SMART helicmild6 1060 1149 IPR001650 -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 369 390 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 226 254 - -
Bhi05g00566 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1188 IPR027417 -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 435 458 - -
Bhi05g00566 1240 Coils Coil 14 34 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 41 57 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 441 458 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 369 391 - -
Bhi05g00566 1240 MobiDBLite consensus disorder prediction 226 280 - -
Bhi05g00566 1240 CDD SF2_C_SNF 1028 1160 - -
Bhi05g00566 1240 Gene3D - 644 916 IPR038718 -
Bhi05g00566 1240 Gene3D - 965 1233 IPR027417 -
Bhi05g00566 1240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 692 889 IPR014001 -
Bhi05g00566 1240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1037 1201 IPR001650 -
Bhi05g00566 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1235 IPR044567 GO:0080188
Bhi05g00566 1240 Pfam Helicase conserved C-terminal domain 1031 1149 IPR001650 -
Bhi05g00566 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 892 IPR027417 -
Bhi05g00566 1240 Pfam SNF2-related domain 696 984 IPR000330 GO:0005524|GO:0140658
Bhi05g00566 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00566 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 1914.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00566 Bhi-Chr5:13974033 Bhi07g00503 Bhi-Chr7:21170949 3.19E-108 dispersed
Bhi05g00565 Bhi-Chr5:13974032 Bhi05g00566 Bhi-Chr5:13974033 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1148 PF00176 SNF2_N 7.40E-20 CL0023 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00566 Bhi_Chr05 FPKM 11.917371 15.517394 11.754087 12.414088 10.540224 10.357249 9.130514 0.445505 0.397451 0.30385