Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00570 CGTCGCCCTTCTCTGTCGCTGTGTCATTCTTCGTTAAGGTTTTTGGAATCCATTAAGAGAGAGAACACCATTTCTGCAGATAATGCCTTCTTTGCTCCTTCACTCATTCTTCTCTTCTCTCTCAGATTCCTTTTAGCAATTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCATTCTCTCTTTCTGGGCATGTTTCTCTCACAGATTTAGCCTCTTCTTCCACCCCTTTTCGTCCCTTCAACCGCCGGCGATGCACCGGGACCGTCCTACGCTTGGCGGCGTCGGCACCGGCACCGGCGCCTCCAAGTTGGACGTCACTCCCATCGATCGAAAGCGCATCAACGACGCTCTCGATAAACAGCTCGAGCGATCCTCGCCCTCCACTTCTCGTACCGTCATTAACGGCAAGGATAATAAGCCCTCCGCGCCTCAGTCGCTGTTAATGCCGAAGCCCTTGTCTGATCAGAGAGACTCTCGTTCTGCGTCTCTCTCTAAGACCAACTGCTCTGAGGAATCTGAGACTGACAGTGAAGAGTCAGATGTTAGTGGATCTGATGGTGATGATACATCTTGGATTTCATGGTTTTGTAATCTGCGAGGAAACGAATTCTTTTGTGAAGTGGATGATGATTATATACAAGATGACTTTAACCTTTGTGGGTTAAGCAGCCAAGTTCCATACTATGATTATGCCCTTGATTTGATTCTGGATGTTGAGTCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAATTGAATCTGCAGCTGAAATGCTTTACGGTCTAATTCATGCGAGATACATATTGACGAGTAAAGGAATGGCTGCTATGCTGGACAAATTCAAGAATTATGACTTTGGGAGATGTCCTAGAGTTTACTGCTGTGGACAGCCCTGTCTTCCTGTTGGTCAATCAGACATTCCTAGAGCAGGCACCGTTAAGATATACTGTCCAAGATGTGAGGATGTTTATTATCCTCGGTCGAAGTTTCAAGACATTGATGGAGCTTATTTTGGAACTACATTTCCTCACCTCTTCCTGATGACATATGGACACCATAAGCCACAAAAAGCCATTCAGAGTTACGTGCCGAGAGTATTTGGATTCAAGATCCACAAGCCATGAAGGCTGAAACTTTGAAGCATTCACTTGGGTGAGTTATGAGCACATCTCTGTTTGCTGCTTTGAGAATTAGTGTAACAGATGCCTCTTTTGAGAATAATAATGATGAAGATTTCTTCCCCTTTATCTGCCTTGGAATGTTAGAATGAAGCATTCGTCTTACCCCTTGTGAATGGATTAATGGAGACTCCAATTCTCATGATGGCTCGATATTTGGTGAGCTTCTTTAGAACACACCCCCCACCCCCACCCCACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAGGAAGAACTCTTTTTGGTAGGTTATGGAGATTGTTGTCTTGTTTAATTTGTTTCTGCATCAAACAGTTTTATTCATGACAATTGAAATATAGCTTGTCACAATGCCTTGTA 1546 43.14 MHRDRPTLGGVGTGTGASKLDVTPIDRKRINDALDKQLERSSPSTSRTVINGKDNKPSAPQSLLMPKPLSDQRDSRSASLSKTNCSEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRAGTVKIYCPRCEDVYYPRSKFQDIDGAYFGTTFPHLFLMTYGHHKPQKAIQSYVPRVFGFKIHKP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14090909 14095778 - XM_039032164.1 Bhi05g00570 34780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00570 293 PANTHER CASEIN KINASE II SUBUNIT BETA 1 292 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 107 123 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 124 138 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 179 200 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 204 225 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 226 247 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 PRINTS Casein kinase II regulatory subunit family signature 253 270 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 MobiDBLite consensus disorder prediction 72 86 - -
Bhi05g00570 293 Pfam Casein kinase II regulatory subunit 107 289 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 ProSitePatterns Casein kinase II regulatory subunit signature. 208 239 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 Gene3D - 205 278 - -
Bhi05g00570 293 PANTHER CASEIN KINASE II SUBUNIT BETA 1 292 - -
Bhi05g00570 293 MobiDBLite consensus disorder prediction 37 58 - -
Bhi05g00570 293 SUPERFAMILY Casein kinase II beta subunit 105 292 IPR035991 GO:0005956|GO:0019887
Bhi05g00570 293 MobiDBLite consensus disorder prediction 22 36 - -
Bhi05g00570 293 MobiDBLite consensus disorder prediction 1 103 - -
Bhi05g00570 293 SMART CK_II_beta_2 107 289 IPR000704 GO:0005956|GO:0019887
Bhi05g00570 293 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 100 204 IPR016149 GO:0005956|GO:0019887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00570 K03115 CSNK2B; casein kinase II subunit beta - csv:101211694 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00570 Bhi-Chr5:14090909 Bhi12g01459 Bhi-Chr12:47201483 1.74E-154 dispersed
Bhi05g00569 Bhi-Chr5:14090905 Bhi05g00570 Bhi-Chr5:14090909 0 tandem
Bhi05g00570 Bhi-Chr5:14090909 Bhi05g00571 Bhi-Chr5:14091328 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00570 Bhi_Chr05 FPKM 10.684874 10.455445 13.972829 12.408902 5.717381 5.843893 6.299489 192.893127 200.655212 191.438843