Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00589 AATTTAGCACATAGTCACAAAGGCCTCTCTTTCAACCCACCCCCTTCTTCTTCCTCAACCATTTCACCATTCTTTTTCCACAGCCATTTATTAGATTCCTTCAATGGTCCTTTCTTCTCCATTGGATTTCGCTGATTCTTAACCAAAAAACCCATCTCAATTCCTTCATTTCCTCTTGATTTTACCCTTTTTTTCTCTCATTTTTTTTGGACTTTTGAACATATAACTCTTCTGGGTTTTTTCTGCCTTCCTTTTTCTTTCTGCAAATTTTTCCCTTCTGGGTTTGTTGTAGACAGCCCTCTTTTTGTAACCCAGGTGTATATGCTTACAGATTTTTAACAAAACAATCATATTTCTTAATTTTTCTTGATTTTTTTCCTTTTTTTGTGAATAAATAAGTTATTTAAGTCAAAGTTTCTTCGAATTTTCTCTTGAACCAAATATTTAAATAAATAGGAAAAAGAACACAAAAAAAGGGAAAAAGAGAGTGATATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGACCTCCTGATAAACCGGTATTATGCAATGCATGCGGATCTCGATGGAGGACTAAAGGAACGCTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCTGATGAATATGAAGATCACAGGGTTTCTAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTTAAACTGCTGAAAAGAAAGCTGCAACAAGCAGATGGATCAATTGGGTGGATGATTCCCGATCAGGGTCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCATCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAATTAACTAAAGATCTATATAGTATTTTACGTGAGCAGAGATCGTCCTACTTCTCTGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTTCAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATGTTTATGGATCAGGAGTACAGCAAGAACAGATTAAAAGGGACGATTCTCTTCACGAATGCTTACAAATGCTTGGAAACCATAAATCACCCTTATGTGATGTAGATATAAATGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAGCAGCAATTAATGAAGTACCTACCACAGGTTGATATTGCTGAATTTCCGGAGACCCTCGAGAGCATGTTTAATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGTGTTTTTGATGCTTCCTTCCTTGGAACAAAGATTGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCGAAATGGGTCGAAAGCTATCATCAACTTAAGAAATGTAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAATTGCGTGAGAGCTACAATCAGAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAAAGAATGATGGATCTTGCTTCAGCCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACGTTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGGTCAAATAGTTCATTCCCACAAGCGGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTCCACCCACATCTTGTTCATCACTAACAACTGTATTTCGATTTCATTACAAGTGTACCTTCTGCTTTTAGCTAATAGCGATGGCTTGGACTCGCATACTTTGCATTGTAAAAGAAAACTCGGTAAATGAGGTCGAATGGCAACTTTTTCGTTTCACCCTTGAAGTTCGAATGGTCGAAACATGAATTTGGGTGGAAATTTTTGTATAGACACTAGATTTGTAATATATATACACTTGAATTTTATGTATTGAAGAATTGATAGTTACAAGATCTTTGTATGCAAAA 2378 39.23 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPSQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQCLVNEVYSPHSSTVLVCSENKGMNFPTSRTGKMKNVYGSGVQQEQIKRDDSLHECLQMLGNHKSPLCDVDINDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLESMFNSPYFKENLTSFQQLLSEGVFDASFLGTKIEDCKTLKRLVLYNSSKSKWVESYHQLKKCKNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGKNDGSCFSPRSLFALPPDGSSLMLESLRFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15387810 15394551 - XM_039032713.1 Bhi05g00589 34799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00589 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bhi05g00589 541 MobiDBLite consensus disorder prediction 514 535 - -
Bhi05g00589 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 541 IPR044589 -
Bhi05g00589 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 406 IPR044867 -
Bhi05g00589 541 Pfam Asx homology domain 289 371 IPR028020 -
Bhi05g00589 541 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Bhi05g00589 541 PANTHER GATA TRANSCRIPTION FACTOR 26 1 541 - -
Bhi05g00589 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Bhi05g00589 541 MobiDBLite consensus disorder prediction 514 541 - -
Bhi05g00589 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bhi05g00589 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bhi05g00589 541 Gene3D - 292 384 IPR038108 -
Bhi05g00589 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00589 - - - csv:101215311 1035.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00589 Bhi-Chr5:15387810 Bhi11g00074 Bhi-Chr11:1812731 0 dispersed
Bhi05g00589 Bhi-Chr5:15387810 Bhi12g01901 Bhi-Chr12:60754479 3.83E-07 transposed
Bhi05g00589 Bhi-Chr5:15387810 Bhi01g01062 Bhi-Chr1:19721471 4.92E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00868 . 88 363 C2C2-Gata Transcription Factor Family AT5G25830 54.1 3.1e-70 263.1
Bhi01g01062 CCT 2 147 C2C2-Gata Transcription Factor Family AT3G06740 61.0 6.0e-37 151.4
Bhi03g00894 CCT,ECH 97 274 C2C2-Gata Transcription Factor Family AT4G36240 50.5 6.4e-41 165.2
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 2.1e-137 486.9
Bhi05g00589 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.1e-133 474.6
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 1.6e-120 430.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1149 PF13919 ASXH 5.00E-10 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00589 Bhi_Chr05 FPKM 6.262319 6.620953 3.974394 4.082679 6.30312 6.491353 5.928943 10.566828 10.168685 9.356471