Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00794 TTGTACTCCGCCATAGCTCTCACACCTCGACACGTTTCTCTTTTATACCATTCCTCTCTCCTTCTTTCTCTCTCAAACAACCTTCCCTTCATTCAACTCTTTGTCAATCCTTCTCTCTCTCTCTCTCTCTCTCTTAGGGTTTCTGCTCTGCTACTCATGATCTTTGCTGGACTTCGCTTGCTGCTTTGAAAATCACAGGGGTTCTGTTGAAGATCCAGGACTGATCGAGAGTCCATAGCAATCAACTGAGTTTGAAGTTTGGACAGTGTAGAAAATACACCAAGTATTGTGAGCCATGGACCAATCAGAGCGTTCTCAGCATCACCAACAATCACAGCAGCCTGCAGGCAGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTAGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCATCCAGTTTCTCCAATTCACCACACCAGCTGGCCTACCAGCAGGCCCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCCGCTGAAGCACCAGTTATATTTGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGAAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAAGAAGGTCTCGGAATCACAAAAGCTTCTATTCCGGTCGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGGATGATCATGGGTAAGCAATTAGATCAAGTGAACATGTATGGTGGCACTGCCCAACAGCCTCGACCATCGATGCCTTTCATGCCGTGGCCACATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAGGTAAAAGTAGTAGGTGTTTTCAAGACCGTCATGATTGATAGAGGCGATACTGAGTGACTTTGAATGTGTCTACTGTCTAGTTTAGTTCATAAAAGAAAAGCTCTTGTAGAGAACTTGTCAGTGATGACAAGTTGCAGTTGAGTTTGTATGATGAGAGGGTGTGGTTTATCTCTAATTATCTATTACTGTAATGTACAACAGTGTATGTGGAAGAGGATCCAACTTTGCCAAAAAGAACTCTAATTTCAATTTTGCTGAGCCTGTGTTTTTTAGCT 1371 44.2 MDQSERSQHHQQSQQPAGSVGAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQVNMYGGTAQQPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25559483 25561811 - XM_039032508.1 Bhi05g00794 35004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00794 266 MobiDBLite consensus disorder prediction 8 39 - -
Bhi05g00794 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Bhi05g00794 266 MobiDBLite consensus disorder prediction 233 266 - -
Bhi05g00794 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Bhi05g00794 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Bhi05g00794 266 MobiDBLite consensus disorder prediction 250 266 - -
Bhi05g00794 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Bhi05g00794 266 MobiDBLite consensus disorder prediction 1 60 - -
Bhi05g00794 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00794 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02319 Bhi-Chr1:56858843 Bhi05g00794 Bhi-Chr5:25559483 7.05E-30 dispersed
Bhi02g02031 Bhi-Chr2:55177480 Bhi05g00794 Bhi-Chr5:25559483 1.74E-79 dispersed
Bhi02g02032 Bhi-Chr2:55177481 Bhi05g00794 Bhi-Chr5:25559483 1.74E-79 dispersed
Bhi05g00794 Bhi-Chr5:25559483 Bhi05g00796 Bhi-Chr5:25559483 0 dispersed
Bhi10g00560 Bhi-Chr10:12268487 Bhi05g00794 Bhi-Chr5:25559483 3.21E-08 dispersed
Bhi05g00794 Bhi-Chr5:25559483 Bhi05g00795 Bhi-Chr5:25559483 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.4e-88 323.6
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi02g02032 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02028 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02029 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02031 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02030 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi05g00797 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00796 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00794 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00795 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi02g00523 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.1e-42 171.0
Bhi02g02032 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02028 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02029 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02031 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02030 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi05g00797 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00796 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00794 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00795 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi02g00523 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.8e-51 199.5
Bhi02g00523 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.7e-38 155.2
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi05g00797 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00796 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00794 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00795 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi02g02032 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02028 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02029 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02031 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02030 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g00523 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.3e-50 194.9
Bhi07g01165 . 59 340 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.8 4.0e-61 232.6
Bhi04g01469 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.7 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1155 PF00125 Histone 6.00E-18 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00794 Bhi_Chr05 FPKM 0.0 0.0 0.0 0.0 3.235029 0.0 0.0 0.0 0.0 0.0