Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00802 TTTCTATTTTCCATTTTCTCAAAAACCCTTTCTCTTTCTCTGCTTCTTCTTTCATTTTCGCTCTGTTTCTGTATTTTCTATCAAGGGTGAAGTTTGAAAGATGGCAGATGGCGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATCGTTGGCAGACCACGTCATACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGGATTGTAAGCAACTGGGATGACATGGAAAAAATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCCATGTATGTCGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGGGTGAGCCACACTGTGCCTATATACGAGGGTTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCCGGTCGTGACTTGACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACAACAACGGCAGAGCGAGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACGGCCAGGACTAGTTCAGCCATTGAGAAAAGCTATGAACTACCCGATGGGCAGGTGATTACAATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCCCTGATCGGCATGGAATCTCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGCGATGTTGATATCAGGAAGGACTTGTATGGTAACATCGTCCTCAGTGGTGGTACGACGATGTTCCCTGGCATTGCTGATCGGATGAGCAAAGAAATCACTGCTCTTGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCTGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAAACTGAATACGACGAGTCGGGTCCGGCTATTGTTCACCGGAAATGCTTCTGAAGAAAAGATCTGATACCAAATCAACAATCTTCTTTTACTTTCATCTTGTGTCATATGTTAAGTGAAGTTTGGTTGGTTCTTGATTTTGAAGATTTGTTTATATTGTCAAATGAGAATTCTTGAAGTTGTAAGTTTGAAATGCCTTTTCCTTTTTTAAAAAAGAAAAAAAATATACAAAATAATATAATATATAGGGTTCTTAGAGGTTTTTTTTTTTTAATGCCAAACTAGTATTTGGAATAGTTGGGCTTAGTATGAACAGCTTTTATTTGTCAGTGATGTTTTGTTGGCTTTGAGGTCATGAGTTGTATGCATCTACACAAAATGTTTTAGGACTTCCTGTGATGCTATAGTTGTGAGTTGTATCATTTTTTTTTAAAGTGTTTTGAATCTTTGAATGTAATTGGTTATTTGCAGAGTATTTTGCAGATCAAGTGTAAGAAGCATTACTATTGTTGTAA 1695 41.3 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKTEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26002013 26005684 - XM_039032055.1 Bhi05g00802 35012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00802 377 PANTHER ACTIN-2-LIKE 1 376 - -
Bhi05g00802 377 PANTHER ACTIN 1 376 IPR004000 -
Bhi05g00802 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bhi05g00802 377 SMART actin_3 7 377 IPR004000 -
Bhi05g00802 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bhi05g00802 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bhi05g00802 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bhi05g00802 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bhi05g00802 377 Gene3D - 10 371 - -
Bhi05g00802 377 Gene3D - 140 340 - -
Bhi05g00802 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bhi05g00802 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bhi05g00802 377 Pfam Actin 5 377 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 28 37 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 51 62 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 63 85 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 117 130 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 142 161 IPR004000 -
Bhi05g00802 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00802 K10355 ACTF; actin, other eukaryote - csv:101214459 753.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03494 Bhi-Chr1:88502543 Bhi05g00802 Bhi-Chr5:26002013 1.97E-93 dispersed
Bhi05g00802 Bhi-Chr5:26002013 Bhi10g02339 Bhi-Chr10:61009448 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.4e-214 741.5
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 735.7
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.9e-212 735.7
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 9.4e-212 733.4
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 3.4e-214 741.5
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G59370 97.3 4.5e-214 741.1
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G59370 93.6 3.9e-210 728.0
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.5e-214 742.7
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.3e-213 739.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 6.5e-213 737.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G46520 93.9 1.8e-210 729.2
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 742.7
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.5e-214 741.1
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.9e-213 738.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 1.2e-211 733.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 4.3e-209 724.5
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.2e-208 720.3
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.4e-207 718.8
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-207 717.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.5e-209 726.1
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.8e-208 721.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 8.2e-208 720.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-207 719.2
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.5e-214 741.1
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.9e-213 738.4
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 5.5e-212 734.2
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 1.2e-57 219.9
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 8.7e-56 213.8
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 74.0 2.5e-55 212.2
Bhi01g03373 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 2.8e-54 208.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.4e-53 205.7
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.5e-57 218.4
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 7.4e-55 210.7
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 7.4e-55 210.7
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 72.5 1.8e-53 206.1
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29350 72.0 2.2e-51 199.1
Bhi06g01687 . 1 87 Cytoskeleton Gene Families AT5G56600 77.0 3.4e-37 151.8
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.2e-65 244.2
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 1.1e-58 223.4
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 1.1e-53 206.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29340 72.4 9.2e-53 203.8
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.7e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276