Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00865 CATTCACATTCACAAAGCTGACTGCCAAAGTCCTTTCCCCAAATTTCTACCTCTACCATTTCCCTTTCTTCACTTTCCCCTTTCCCCCCCTCAAATCTCTTTCTCTCTCTCTCTCTCTGATTCACTCTCCTCCCATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATTGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGTCATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGTTATTATGCCCATGGAGAAGAAAATGAGAATTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCATATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTAAGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCTACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCCAACAATGTTGAAGCTTGGTCATCAGTTCCTGCTGTGGATTATTTAACACAAGTTCAGAAAGATGGACTTGGGGGTAGCAAAGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCGTCATGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACCGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTGACAAGCTTTTAACCAATAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTCTCAAAAGAGCACGTTGACCAGTTTCCAGATTTGTATTCAGTTTATAACCTAGATAGCAGGTTAACTGAGCAAACATCTCACAATGCAGCTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCATAGAGAATGAGAAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACTATGAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGAGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGACCACTGTAGATTGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAATAGCCTTTTCTCCAAAGTGGACACTAGCAGATTTAGAAACCGAGGTTGTGATTATAGGGAAGTTTCTGGGGAACAATCTTGGCATGAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTATGGCTGATGGGATCCTGTGCTGTCATGCTCCGCCACATAGTATTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCCATATATACACTGCTGGTTCAATGGAAGAACGTATGCATTTTCAATTTGAGAGGTTACTGTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGGTGCTTTGGAGAAACGGAAGTTAATCAGAGATCTGATCACAATAAAAGAAGAAGACTTGTATGGGGAAGATCCAAATCCTCAGAATGATCCAATTCAGCATCAAAGCAAGGAGTTTCATTTCGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCGCAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCTGGGGGTAATTCATTTAGCAGCAGCCCTTGGATATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATATCATTGGATGCTGCTCCTGGATTGCCGTCAGATCCTTCTCCAGAATTTCCTTGGGGCAGATTGGCTTCAGATCTTGCGTCTGATAATGGTCACAAAGGGATCTCTGGTTTCCTTGCAGAGGCAGCGTTGACCAGCTATGTCGAATCCGTATCAATGGCTGAATCCATATCAATGGGTGAGACTGTAGAAGATGGTGTGCCAGATGTTTCAAAGACGAAACCTGTGCAAACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCATATATATATGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACCGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCAAGGGCACGTAAGTCTGGACTAAGTAACAGCCCAGCCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAGAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAAGATGATTACGATTTTCTAAAAGAAGGAAGAAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGTTGTTACTAGTACTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGATGACGATGCTTTGATGTCTATGACATTTGATTGAGAAACAGATTATGTTATCAATCAGCCTTCTGCTCTGATGCTCCTAACTTCAGCTTTTGCTTGTAAATACAACTCTAACTAATGTATCAGATTCAGATCTTTATATTATGAACACACAGTATTGGCTCCCTACCAAAAAGGGTATAGATTTTATAGGTTGGTGATAGGCTTACCTGATGTTGTAATTTATGGAGGAGAACCGGATCGTGTCAACTGATTAAATTTGAACCAAATTACTAGCGAATTTGTATATGAAAAGAACACTTGTTATTGCTGCAATTTGTATGTTCGTGTCATATTTTGAAAGGTAATTTTGAAGTTTGATTGTATTGGACGTTTCGTTTTA 3773 41.48 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPKSSSYSSSHNQAASENADSPSPTSTLTSFCEDADTDTYQATSRFHSFPTSPKMGNGLLVNKQDAGQSNFYFPHSSSNNVEAWSSVPAVDYLTQVQKDGLGGSKGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPDKLLTNNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHVDQFPDLYSVYNLDSRLTEQTSHNAAFGSGHEMFCAHPGIENEKILPNLELQFKEGESYSAMRLSSENDMSKEGTMSYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVDCGDMVDDSSLSPSISEDQLFSIIAFSPKWTLADLETEVVIIGKFLGNNLGMNCHWSCMFGEVEVPAEVMADGILCCHAPPHSIGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTHIYTAGSMEERMHFQFERLLSLGSLDPSNDLSEGALEKRKLIRDLITIKEEDLYGEDPNPQNDPIQHQSKEFHFVKLMKEKLYSWLIRKVIEGGKGPNILDGEGLGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAAFCGRELTVGTLISLDAAPGLPSDPSPEFPWGRLASDLASDNGHKGISGFLAEAALTSYVESVSMAESISMGETVEDGVPDVSKTKPVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGHIYMMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMVVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29422399 29440517 + XM_039032568.1 Bhi05g00865 35075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00865 1097 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Bhi05g00865 1097 SUPERFAMILY Ankyrin repeat 686 799 IPR036770 -
Bhi05g00865 1097 SMART iq_5 942 964 IPR000048 GO:0005515
Bhi05g00865 1097 SMART iq_5 919 941 IPR000048 GO:0005515
Bhi05g00865 1097 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Bhi05g00865 1097 SUPERFAMILY E set domains 507 591 IPR014756 -
Bhi05g00865 1097 Pfam IQ calmodulin-binding motif 945 964 IPR000048 GO:0005515
Bhi05g00865 1097 Pfam IQ calmodulin-binding motif 921 940 IPR000048 GO:0005515
Bhi05g00865 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 970 IPR027417 -
Bhi05g00865 1097 SMART CG_1_2 18 136 IPR005559 GO:0003677
Bhi05g00865 1097 Gene3D - 920 967 - -
Bhi05g00865 1097 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1097 - -
Bhi05g00865 1097 Gene3D - 668 807 IPR036770 -
Bhi05g00865 1097 Gene3D Immunoglobulins 500 596 IPR013783 -
Bhi05g00865 1097 ProSiteProfiles IQ motif profile. 920 949 IPR000048 GO:0005515
Bhi05g00865 1097 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1097 - -
Bhi05g00865 1097 ProSiteProfiles IQ motif profile. 943 967 IPR000048 GO:0005515
Bhi05g00865 1097 MobiDBLite consensus disorder prediction 147 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00865 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1941.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00865 Bhi-Chr5:29422399 Bhi11g00943 Bhi-Chr11:29677405 0 dispersed
Bhi05g00865 Bhi-Chr5:29422399 Bhi05g00866 Bhi-Chr5:29422399 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi05g00866 . 1 1098 CAMTA Transcription Factor Family AT5G64220 52.6 2.2e-271 932.9
Bhi05g00865 . 1 1097 CAMTA Transcription Factor Family AT5G64220 52.6 3.2e-270 929.1
Bhi12g02456 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02457 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02458 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g01914 . 34 904 CAMTA Transcription Factor Family AT3G16940 55.6 8.4e-266 914.1
Bhi12g01913 . 34 902 CAMTA Transcription Factor Family AT3G16940 55.8 1.4e-265 913.3
Bhi12g01914 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.6 2.5e-194 676.8
Bhi12g01913 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.6 8.2e-193 671.8
Bhi05g00866 . 1 1098 CAMTA Transcription Factor Family AT5G64220 52.6 2.2e-271 932.9
Bhi05g00865 . 1 1097 CAMTA Transcription Factor Family AT5G64220 52.6 3.2e-270 929.1
Bhi12g02456 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02457 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g02458 . 6 861 CAMTA Transcription Factor Family AT1G67310 51.2 9.8e-248 854.4
Bhi12g01914 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.6 2.5e-194 676.8
Bhi12g01913 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.6 8.2e-193 671.8
Bhi12g01914 . 34 904 CAMTA Transcription Factor Family AT3G16940 55.6 8.4e-266 914.1
Bhi12g01913 . 34 902 CAMTA Transcription Factor Family AT3G16940 55.8 1.4e-265 913.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1162 PF03859 CG-1 9.10E-51 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00865 Bhi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bhi05g00865 Bhi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0