Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00901 CATTCAAAACTTTCGGTGACCTACTTTCTTAAACCACTCCTTTCAATCCGCCGCCTGATTTTCTCAATTTCAACTCTTCTGTTCTCTTCAAATTCCGCCATGGATTTCATCTCCACGAGAAAACTCCTCTCCGACGACGAAGATGACATCGAGAAATTCTGCAAAGACTGCCACGAGTACCTTACCGGTTCTTGCTCTTCCGATTGCATCGAAAAATGCCCAAAACTCTGCTATATCTCAATGTCAATCCCACCGCCGCCCTCTAAATCGCCTCACAAACTCTCCAATTTGGTTACCTCCACCATCGCCCTTCTCTCCTTCACCTTCCTCCTCGTTCTCTGCTACGCCATCTATGCTCGTTTCTACTCCGGCCGCCGCAGACGGATTCGTCGCCCCGATCCACCACCGCCCGTGACTCACCACCAGCATGACTTTCTCGACGAAGAACAAGGCCCTGTTTTGGATCACCCCATTTGGTACATCCGCACCGTCGGCCTCCCGCCGGCCGTTATCGAGGCTATCGCCGTCTGCAAGTTTAAATCCGGCGAGGGTTTGATCGATGGAACAGAATGCTCTGTTTGTTTGAGCGAATTTGAAGAGGATGAAACCTTGAGGCTTTTGCCAAAGTGTAGCCACGCTTTTCATCTCCCCTGTATTGATACTTGGCTTCGATCTCACACTAATTGCCCCATGTGCCGTGCTCCTGTTGTAGCTCAGCCCACCGCCGCCGCTTCTCCGCCACCACCACAGCCTCCAGCCGAAACCCAGATGAGGGAATGGCAAAGGGGAGAGGGAGATGGAGCCAATTTGGGGGAAAGTTCCACTAGAAATGAAGAACAAGAACAAGAACAAGTAGAAATCCATTTTCCTGAAGAAGATTTAGAAGAAATTCAGCCAGTGAGAAGATCTATATCACTAGATTCTTTATCAGCTCTTCGAATCAGCTCAGTTTTTGCTAATGTTAATGAAAAAATGGACTCTGAAGCTGAATCAATGCAGAGAAATGGGAATGAATCGAAGAAATCATATCAAGGGAGAGGCAATTCTTCTTCTGCTATGAACAGGTCAGTTTCATGTAGTGGGAAGTTTCTAATGAGAAGAAGTGCTGAAACTAATCAAAGTTGAATTTTTTTTGCTTTTTCTCTTTTTGAGTATCTCTGAAGATGGGGATGTCTATACAAACTCTTAGAAAGCTGAGAGGATCTGAAGGTTTTTTTTTTGTCAAGTACAGATGATATGAAAAGATTAATGATATACATGCATACAAAGTTGAAATATA 1279 45.35 MDFISTRKLLSDDEDDIEKFCKDCHEYLTGSCSSDCIEKCPKLCYISMSIPPPPSKSPHKLSNLVTSTIALLSFTFLLVLCYAIYARFYSGRRRRIRRPDPPPPVTHHQHDFLDEEQGPVLDHPIWYIRTVGLPPAVIEAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAQPTAAASPPPPQPPAETQMREWQRGEGDGANLGESSTRNEEQEQEQVEIHFPEEDLEEIQPVRRSISLDSLSALRISSVFANVNEKMDSEAESMQRNGNESKKSYQGRGNSSSAMNRSVSCSGKFLMRRSAETNQS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31550248 31551526 + XM_039032185.1 Bhi05g00901 35111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00901 341 MobiDBLite consensus disorder prediction 303 325 - -
Bhi05g00901 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Bhi05g00901 341 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Bhi05g00901 341 SMART ring_2 158 199 IPR001841 -
Bhi05g00901 341 MobiDBLite consensus disorder prediction 207 257 - -
Bhi05g00901 341 Pfam Ring finger domain 157 200 IPR001841 -
Bhi05g00901 341 MobiDBLite consensus disorder prediction 292 341 - -
Bhi05g00901 341 PANTHER RING-H2 FINGER PROTEIN ATL54 19 334 - -
Bhi05g00901 341 CDD RING-H2_PA-TM-RING 157 200 - -
Bhi05g00901 341 SUPERFAMILY RING/U-box 152 206 - -
Bhi05g00901 341 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 334 IPR044675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00901 - - - csv:101207812 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00901 Bhi-Chr5:31550248 Bhi12g01440 Bhi-Chr12:46412911 7.57E-37 dispersed
Bhi05g00900 Bhi-Chr5:31550247 Bhi05g00901 Bhi-Chr5:31550248 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00901 Bhi_Chr05 FPKM 9.184339 9.83952 7.32477 7.101877 8.920672 7.62163 9.148326 10.436026 9.630573 11.675318