Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00918 TGAATTTGGAGAAATATGAGAAAAATAAAGACATGTTGATATGAATGGCTTCACCACCATTGGATCTGCCGATCTGCAAGTAAGATCAAATTCAACCAACCGTTTGTTTCAGCTCCTTCTTCTTCGCCATTTCTGCTTTCTTTTCTCCTCGCCGGCGCTGGTTCGCCGCCGGCTTCTCTCATTCCGGTGAACTTGAAGTGAATTGTAGTGGCATCAACCGTAAAAATCCCCCAAATTGAAGAAATGCCGAACTCCAATTTCCAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACCGAGTTGGCGACGAAGATGACGACATCAACGGCGGGGAAGAGTCTATAGATAACCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCGCGGTAATGAACCGAGTCCAAGACGTTGTTCCTTCGGCGTATGTTTCCGGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGTGGGGACGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAACTTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCGTCAACCAACAGGGTACAGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAGGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTATTGGTGATGAAGTGGGTTCTTCTTCAGTTTTGTCTCAGACTTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTATCAAACACTGGCATTCAAGAACCCTCTGCAAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCCGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAGGCTATAAACCACAAAAGGTAGATGTAAAAAAGTTGATTAACAGACTTTTTGCTTAGTGCTTGCTGGTTGAAGTTAGAGCATTCGAGTATTCCAACAAAATTATATGGAAATTCTTCATGCTCTGCTCTGTGCACTTTAGAGAGTATAAGAAGAACCAAAAACAATAAAAGAATTGCTTTCACCATTAGTCACCAATCATGTAGCTGAAAATAGATGGGATTCAGAGGGTGGGTGGTGAAAGATTTTGCGGTCTTCAATGGCCTTTTGGTCAAACTAGAAGAAGAAGCTTCTCACTTATAAGAAGCTCCGATCAAAGGCTGATGAGTTGAGTTGCCTCCACTTGATGATATGAAATTAGTAATGTTATCTTATTCTTCTTCTACAATGTCTGAAGATGTATATGCAATCTTCCCCATGTAAAAAGGGCAATTAAATACTTCAGATCACTTTTTTTTTTTTTTTTTTTTTTTTGCGCTCATTTTTACACCCTTATTTTTCATTTTCTTATTTATAGCCTAGAAGTAAATAATATGTAGTGTAATTTCTGACCTCTTACCAGGGGTAATTTAGTTACTTTGTATGTGAGGGTACAATAATTTCATCTTCTTGCTTTTCATCTTTCCCTTATGGTATGAGAAGTTGAAGATTCGTTGATGTATTCGTAAA 1833 42.28 MPNSNFQDAMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVAVMNRVQDVVPSAYVSGSDYNPLTGNGGADQLTLSFRGDVYAFDSVSPDKVQAVLLLLGGYELPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNGDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32241302 32248501 - XM_039032035.1 Bhi05g00918 35128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00918 307 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Bhi05g00918 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Bhi05g00918 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Bhi05g00918 307 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Bhi05g00918 307 MobiDBLite consensus disorder prediction 1 50 - -
Bhi05g00918 307 Pfam tify domain 90 120 IPR010399 -
Bhi05g00918 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Bhi05g00918 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Bhi05g00918 307 SMART tify_2 86 121 IPR010399 -
Bhi05g00918 307 MobiDBLite consensus disorder prediction 267 307 - -
Bhi05g00918 307 Pfam CCT motif 153 195 IPR010402 GO:0005515
Bhi05g00918 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Bhi05g00918 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Bhi05g00918 307 Gene3D - 221 286 IPR013088 GO:0006355|GO:0008270
Bhi05g00918 307 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Bhi05g00918 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00918 - - - csv:101222542 560.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01392 Bhi-Chr4:35094400 Bhi05g00918 Bhi-Chr5:32241302 1.05E-80 dispersed
Bhi05g00918 Bhi-Chr5:32241302 Bhi09g00226 Bhi-Chr9:4919810 1.85E-73 dispersed
Bhi05g00918 Bhi-Chr5:32241302 Bhi05g00919 Bhi-Chr5:32241302 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1164 PF06203 CCT 1.60E-15 CL0281 Bhi TF