Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00953 AAGAGGACCCACCGCTCGTGTTAACCAAAACATTGTCCAGCTCCAGCTTTTGCTTGTAAACAGTCAAAATCTCTCGATACCGCTCGTGTGAGAGTGTGATCATCTTCATCTTCAATCGGCGCCGGAGAAAAATGTTGCAGTCTTCGATTTGGCGAGTGAAAAAATTGAGTCTTCTGAGACCTCAGATCTTTGCTCTTGGAAATTCTCGTTTCTCCACCTTTGCTGAACCGTCTTCCAAGCCTAATCCGCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTTGATTCTCGATCCTCAGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACGTTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAACTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTGATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCACTGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGATGCATGGCCCTTAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGAAAAACTTGTAGAACGTGCCAAAACACTGAAGGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAGTCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTCCCTGGATACGAGTATGGAAATTTTATTGGACCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTAGAGGAGGCCATTAGCATCGTTAACGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATAGCGGCGAGGAAGTTTCAAACAGATATTGAAGCTGGACAGGTTGGGATCAACGTTCCGATTCCAGTTCCGTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGAGTCAACTTCTTCACACAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTACAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAGGTTACCTTTCAACTTATTGTAATCACTCTTAAATAAACTTTATGCAGCTATTTTCAGTGCACATATAAATAAATACTTTTTTTTTTCCCA 1835 43.38 MLQSSIWRVKKLSLLRPQIFALGNSRFSTFAEPSSKPNPPRVPNLIGGTFVDSRSSAFIDVINPATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPDGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASTDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEEKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVPGYEYGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTTVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33483089 33492080 - XM_039032443.1 Bhi05g00953 35163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00953 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 15 534 - -
Bhi05g00953 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Bhi05g00953 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Bhi05g00953 537 SUPERFAMILY ALDH-like 37 519 IPR016161 GO:0016491
Bhi05g00953 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
Bhi05g00953 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Bhi05g00953 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 534 IPR010061 GO:0004491
Bhi05g00953 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Bhi05g00953 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00953 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101204924 1021.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01706 Bhi-Chr3:35906489 Bhi05g00953 Bhi-Chr5:33483089 0 dispersed
Bhi03g01707 Bhi-Chr3:35907704 Bhi05g00953 Bhi-Chr5:33483089 0 dispersed
Bhi05g00953 Bhi-Chr5:33483089 Bhi10g00929 Bhi-Chr10:19072439 4.30E-62 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01117 . 5 504 Aldehyde Dehydrogenase Gene Family AT3G24503 71.7 2.0e-214 742.7
Bhi06g01785 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi06g01786 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi06g01787 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi02g00432 . 76 560 Aldehyde Dehydrogenase Gene Family AT3G24503 54.9 2.8e-155 546.2
Bhi02g00432 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 5.9e-252 867.5
Bhi06g01785 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi06g01786 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi06g01787 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi02g01117 . 20 504 Aldehyde Dehydrogenase Gene Family AT3G48000 55.7 3.9e-163 572.4
Bhi06g01785 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi06g01786 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi06g01787 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi02g00432 . 59 410 Aldehyde Dehydrogenase Gene Family AT1G23800 78.4 3.8e-166 582.0
Bhi02g01117 . 20 348 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 3.1e-104 376.3
Bhi09g02693 . 7 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 3.8e-182 635.6
Bhi09g02694 . 18 502 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.5e-180 629.0
Bhi09g02695 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 1.8e-179 626.7
Bhi09g02694 . 89 500 Aldehyde Dehydrogenase Gene Family AT1G44170 71.6 3.8e-177 618.6
Bhi09g02693 . 72 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.6 3.8e-177 618.6
Bhi09g02695 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 70.6 1.0e-174 610.5
Bhi10g00318 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.7 2.8e-116 416.4
Bhi10g00318 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 5.0e-157 552.0
Bhi10g00929 . 33 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 1.6e-233 806.2
Bhi05g00953 . 15 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.8 2.2e-239 825.9
Bhi03g01706 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01703 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01707 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01704 . 177 639 Aldehyde Dehydrogenase Gene Family AT2G14170 63.2 3.2e-174 609.4
Bhi03g01705 . 177 613 Aldehyde Dehydrogenase Gene Family AT2G14170 58.9 4.2e-158 555.8
Bhi02g00392 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 3.9e-250 861.3
Bhi02g00392 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.5 2.2e-253 872.1
Bhi06g01830 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.2 6.5e-269 923.7
Bhi06g01831 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.9 4.2e-268 921.0
Bhi08g01411 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 2.0e-258 889.0
Bhi08g01410 . 6 502 Aldehyde Dehydrogenase Gene Family AT5G62530 80.5 1.7e-249 859.4
Bhi08g01409 . 21 511 Aldehyde Dehydrogenase Gene Family AT5G62530 70.9 9.5e-229 790.4
Bhi12g01925 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 1.0e-276 949.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00953 Bhi_Chr05 FPKM 6.803964 6.836068 3.062038 2.736196 14.376456 13.873387 13.185198 0.66875 0.408261 0.709056