Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01027 TTTAGAGCGTGCAGCGAACCAAACCAGTGAGGCCTATTATAAAAGGAAAGGATGGCTAGCTTTGCAGGAACCACACAAAAGTGCATGGCTTGTGACAAAACGGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGGGTGTTTCATAAGGCTTGCTTCCGATGCTACCATTGTAAGGGCACTCTCAAGCTTAGCAACTATTGTTCCTTTGAAGGAGTGCTCTACTGTAGGCCACATTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGCTTTGAAGGAACTCCGAAAGTAGTGAAACTAGACAAGCCCACCGAAAACGAGAATGCAAAGTCAGTCTCCAACATGTTCGCTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAACGGGACCGCGTATCACAAAAGCTGCTTCAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGGAAACTGTATTGCAAACATCATCACATTCAACTATTCAAGGAGAAGGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACAATAATGCATCAGTGGCAATGACATTAACCTCTCCAATGGAAATTGCAGCTGAATCATAGTCTCTATTTTTAAATAATTTCAAATATTAATCTCTTCAGCTGGTTGTGTTCCTTA 709 42.03 MASFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKVVKLDKPTENENAKSVSNMFAGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNNASVAMTLTSPMEIAAES 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36529986 36531911 - XM_039032832.1 Bhi05g01027 35237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01027 200 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Bhi05g01027 200 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 187 - -
Bhi05g01027 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Bhi05g01027 200 PANTHER OS06G0237300 PROTEIN 1 187 IPR045268 GO:0051015
Bhi05g01027 200 CDD LIM1_SF3 7 69 - -
Bhi05g01027 200 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Bhi05g01027 200 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Bhi05g01027 200 Pfam LIM domain 109 164 IPR001781 -
Bhi05g01027 200 Pfam LIM domain 11 65 IPR001781 -
Bhi05g01027 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Bhi05g01027 200 Gene3D Cysteine Rich Protein 103 173 - -
Bhi05g01027 200 Gene3D Cysteine Rich Protein 5 75 - -
Bhi05g01027 200 CDD LIM2_SF3 109 169 - -
Bhi05g01027 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Bhi05g01027 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Bhi05g01027 200 SMART lim_4 10 62 IPR001781 -
Bhi05g01027 200 SMART lim_4 108 160 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01027 K09377 CSRP; cysteine and glycine-rich protein - csv:101214700 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00404 Bhi-Chr2:7639587 Bhi05g01027 Bhi-Chr5:36529986 1.44E-94 dispersed
Bhi05g01027 Bhi-Chr5:36529986 Bhi09g03223 Bhi-Chr9:82884081 8.97E-105 dispersed
Bhi05g01027 Bhi-Chr5:36529986 Bhi04g00436 Bhi-Chr4:10934682 1.73E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1173 PF00412 LIM 9.00E-13 CL0167 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01027 Bhi_Chr05 FPKM 9.868022 6.460535 9.32937 10.078897 88.723915 75.59771 90.399223 9.482965 10.486335 9.99079