Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01063 AAAAAAGCAAAGGGATTAGGTACTCATCTCTTAAGCGTAGACTTGAAAAACGACCAAAGTCTATGCTCTTCCTTCAAAATCGTATTCTCTTGATTGAAGAAGACGAAACCATTGACACCCCAGCAAAGCCCACTTGACTTTTCATCATTCCCTCTTCTTCTGCTCTGACCCAATTGGCCATCACTATGGCTATGGCTTCAACAGAGCTTAAATGTTGAAAACACGTCAATTCCACACTATTTATCAGCAACCCATTTCTCCTTCTTTTCGTTTTCTCCCCCCAAATCTCTTTAACTCCTCGATTTGCCAGATGGGTATCTTTTCAAAGCAAAAAATCTGGAGAGCGGGAACGACCCATGATGATTCGATGGGATTTAATGGGGTTCCTGCAACGAGCAAGAGGAAATGGACTCGTTTTTTGCCTTTGTTTGTGGCCATTGTGGTTATAGCAGAGATCACTTCTTTGAGTCGGCTTGACATGGCGAAAAATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTTTATGGATCTCCGGTTTTGCAAGAAGGGAATGAAGGTGGTAGTAAATTGGGCACGGGAATGTCTATTGATGATGGAGAAATTGATAGAGTTAGGTGTGAGGAGTGGCTGGAGAAGGAGGATGCTGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGTTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTTAATCCTGGCCAGCAGCCTGATGCTATATTCGGATCGCCTCAACAAGGTAGTGCTGCTAGCGTACTTCGATCCATGGAGTCATCGCATTACTATCCAGAGAACAATATTGCTTTGGCAAGACGGAAGGGTTATACCGTGGTTATGACCACTAGTGTATCATCAGATGTCCCTGTTGGATATTTTTCTTGGGCAGAATACGAGATAATGGCACCAGTACAGCCAAAGACTGAGCCTGCCCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCCCGAAACTTCCGTTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTAGTTGCCACAGGAACCACGATGGACGAGTTGACAAGGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACGGAAAAGTTTTTCCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGTGCTCCAAATATCGAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCATATCAAGGAATTCTCCGATGTTGAGTCAATTGCCAAGTCCATGAAATACCTTGCTGAAAATCCCAAATTGTACAATCAATCCCTAAGATGGAAGTACGACGGTCCATCTGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCCGTACACTCATCCTGCCGCCTTTGCATCCACATGGCAACCATCATCCATGAGAAAGAAGAAAACAGTCCCAGGTTCAAGAAACGACCGTGCAAATGTTCTCGAGGCTCTGAAACTGTATATCATTTATATGTAAGGGAGAGAGGGAGGTTTGAAATGCAATCCATTTTCTTGAGGTCAGGAAATTTGACATTGGAGGCTTTAGAATCAAGGGTACTCGAAAACTTCAATTCTTTGAAACACGTACCGATTTGGAAGCAAGAACGGCCCGAAAGCATAAGAGGAGGAGATGAACTAAAACTATATAGAATATATCCTGTTGGGTTGACTCAGAGGCAGGCTTTATATACCTTCAGATTCGAAGGCAATGATCATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAAGTCATATTTGTTTGAGTCTAAATCATCTTCCGAGCGCATCCGATATGCGATTAACTCGTTCATCATTGGACGTATAATTTGTATAACATAGTTGCTGAACTAATGTAAGTTTAGGGTGCAACAAGACGAGAGCAGAAACCTAGCAATGGCTGCCAAATGGGGGTTTCCTTTGATCAGCTAATTACAGATCATGCGCTCTTGTAAATGTTGAGAACAGAATTGGCCTTTGTGGGCGTGATGCATATTTTGCTAGTTGAATCTAGCCAATTCCACGAACAATCCTCTTCTTATTTTCTCA 2135 43.19 MLKTRQFHTIYQQPISPSFRFLPPNLFNSSICQMGIFSKQKIWRAGTTHDDSMGFNGVPATSKRKWTRFLPLFVAIVVIAEITSLSRLDMAKNAAMVDSWVDLFYGSPVLQEGNEGGSKLGTGMSIDDGEIDRVRCEEWLEKEDAVEYSRDFKREPVLVSGSEKEWRTCDVGCQFGFNPGQQPDAIFGSPQQGSAASVLRSMESSHYYPENNIALARRKGYTVVMTTSVSSDVPVGYFSWAEYEIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNHDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEEFAPSPDSFLHIKEFSDVESIAKSMKYLAENPKLYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATIIHEKEENSPRFKKRPCKCSRGSETVYHLYVRERGRFEMQSIFLRSGNLTLEALESRVLENFNSLKHVPIWKQERPESIRGGDELKLYRIYPVGLTQRQALYTFRFEGNDHFRTHIETHPCAKMEVIFV 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38443637 38449708 - XM_039032081.1 Bhi05g01063 35273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01063 546 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 155 422 - -
Bhi05g01063 546 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 66 523 - -
Bhi05g01063 546 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 256 417 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bhi05g01063 546 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 66 523 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bhi05g01063 546 Gene3D - 202 395 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01063 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 991.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01672 Bhi-Chr1:34979806 Bhi05g01063 Bhi-Chr5:38443637 0 dispersed
Bhi05g01063 Bhi-Chr5:38443637 Bhi05g01064 Bhi-Chr5:38443637 0 tandem
Bhi04g01632 Bhi-Chr4:40566136 Bhi05g01063 Bhi-Chr5:38443637 1.17E-14 transposed
Bhi01g01671 Bhi-Chr1:34979805 Bhi05g01063 Bhi-Chr5:38443637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01534 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.5 1.8e-155 547.0
Bhi07g01534 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 4.0e-165 578.9
Bhi07g01534 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.2e-136 484.2
Bhi05g01063 . 34 546 Xyloglucan Fucosyltransferase1 AT1G49710 64.2 5.9e-193 671.4
Bhi01g01672 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.5 3.0e-184 642.5
Bhi01g01671 . 1 435 Xyloglucan Fucosyltransferase1 AT1G49710 63.0 1.3e-152 537.3
Bhi05g01064 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 7.6e-148 521.5
Bhi04g01632 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.9 3.6e-169 592.0
Bhi07g01534 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 2.4e-182 636.3
Bhi01g03067 . 20 501 Xyloglucan Fucosyltransferase1 AT2G03210 51.1 1.7e-140 497.3
Bhi07g01534 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.5 3.5e-199 692.2
Bhi01g03067 . 15 501 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 1.9e-152 537.0
Bhi07g01534 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 6.7e-152 535.0
Bhi07g01534 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 4.3e-146 515.8
Bhi07g01534 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 5.0e-150 528.9
Bhi05g01063 . 34 546 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 7.1e-191 664.5
Bhi01g01672 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 4.0e-186 648.7
Bhi01g01671 . 1 436 Xyloglucan Fucosyltransferase1 AT3G19280 64.8 2.0e-153 540.0
Bhi05g01064 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 1.9e-151 533.5
Bhi07g01534 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 2.4e-182 636.3
Bhi01g03067 . 20 501 Xyloglucan Fucosyltransferase1 AT2G03210 51.1 1.7e-140 497.3
Bhi07g01534 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.5 3.5e-199 692.2
Bhi01g03067 . 15 501 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 1.9e-152 537.0
Bhi07g01534 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 2.4e-182 636.3
Bhi01g03067 . 20 501 Xyloglucan Fucosyltransferase1 AT2G03210 51.1 1.7e-140 497.3
Bhi07g01534 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 5.0e-150 528.9
Bhi07g01534 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 4.3e-146 515.8
Bhi07g01534 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.5 1.8e-155 547.0
Bhi07g01534 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 4.0e-165 578.9
Bhi07g01534 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.2e-136 484.2
Bhi07g01534 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 6.7e-152 535.0
Bhi05g01063 . 34 546 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 7.1e-191 664.5
Bhi01g01672 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 4.0e-186 648.7
Bhi01g01671 . 1 436 Xyloglucan Fucosyltransferase1 AT3G19280 64.8 2.0e-153 540.0
Bhi05g01064 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 1.9e-151 533.5
Bhi05g01063 . 34 546 Xyloglucan Fucosyltransferase1 AT1G49710 64.2 5.9e-193 671.4
Bhi01g01672 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.5 3.0e-184 642.5
Bhi01g01671 . 1 435 Xyloglucan Fucosyltransferase1 AT1G49710 63.0 1.3e-152 537.3
Bhi05g01064 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 7.6e-148 521.5
Bhi04g01632 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.9 3.6e-169 592.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01063 Bhi_Chr05 FPKM 0.549784 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0