Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01075 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCGGCCAATGGAGGGGCAAATCAGCATGTGACGACGTCGTTGTATGTTGGGGATCTTGACGTCAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGCCGATCGCTTGGTTATGGTTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCCATTAGGGTCATGTATTCACATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACTTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAATCTAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAATAATGTTTTCGTTAAGAATCTAGCAGAAACTACAACTGAAGAAGATTTGAAAAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTAAATTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAGGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCCGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCACTGGGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTTTCTACTCCTGAAGAGGCTGCAAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTCGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGAGGCAGGCGTGCTGGGGCCATTCAGCAAACCCAGCAGCCTGTTCCTCTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGAGATGCTGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAGAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATCCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCTGAAGCTCTGAAAGCAAAGGTGGCGGAGGCAATGGAGGTTTTAAGAAGCGTTGCTCAGCAGACCGGTAATGCAGCTGATCAATTGGCTTCACTATCCCTGACTGACAACCTTGATTCCTAATCTGAATCTTGCAACAACCCCTTCTGTTTTTTTCATGAGCCACAAACTTGGTGCTTTTTATTGACACTTTGAGATGCGAAGTTCAACTATTTTTGTTCGAACCGAGTGATGATTTCTATATTACTGGCAATGATTGTGGGAACCTATGCTTAAGTTTTGTTGTGAAGCGTTTTGCTATCATTAACACACTTCAAATGTGCTATGGAAGTTACCTTTTATGAGTTTTGGTTTGATTGAAATTGAA 2194 45.26 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLAETTTEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSTPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNPAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 649
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 38774445 38778150 - XM_039031752.1 Bhi05g01075 35285
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01075 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bhi05g01075 649 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bhi05g01075 649 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bhi05g01075 649 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bhi05g01075 649 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bhi05g01075 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bhi05g01075 649 Gene3D - 4 110 IPR012677 -
Bhi05g01075 649 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Bhi05g01075 649 MobiDBLite consensus disorder prediction 1 23 - -
Bhi05g01075 649 SMART poly_2 564 627 IPR002004 GO:0003723
Bhi05g01075 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bhi05g01075 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bhi05g01075 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Bhi05g01075 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bhi05g01075 649 Gene3D - 199 293 IPR012677 -
Bhi05g01075 649 CDD RRM4_I_PABPs 310 388 - -
Bhi05g01075 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bhi05g01075 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bhi05g01075 649 CDD RRM1_I_PABPs 30 109 - -
Bhi05g01075 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Bhi05g01075 649 Gene3D - 294 397 IPR012677 -
Bhi05g01075 649 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bhi05g01075 649 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bhi05g01075 649 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bhi05g01075 649 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bhi05g01075 649 Gene3D - 111 198 IPR012677 -
Bhi05g01075 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bhi05g01075 649 CDD RRM3_I_PABPs 207 286 - -
Bhi05g01075 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bhi05g01075 649 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bhi05g01075 649 SUPERFAMILY PABC (PABP) domain 493 638 IPR036053 GO:0003723
Bhi05g01075 649 Gene3D - 547 631 - -
Bhi05g01075 649 PANTHER RNA BINDING PROTEIN 18 634 - -
Bhi05g01075 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bhi05g01075 649 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01075 Bhi-Chr5:38774445 Bhi08g01842 Bhi-Chr8:53535624 1.64E-10 dispersed
Bhi01g01179 Bhi-Chr1:23157354 Bhi05g01075 Bhi-Chr5:38774445 2.21E-23 transposed
Bhi01g03305 Bhi-Chr1:83096062 Bhi05g01075 Bhi-Chr5:38774445 5.19E-08 transposed
Bhi04g01590 Bhi-Chr4:39998563 Bhi05g01075 Bhi-Chr5:38774445 0 transposed
Bhi08g02213 Bhi-Chr8:63079309 Bhi05g01075 Bhi-Chr5:38774445 4.95E-07 transposed
Bhi09g00981 Bhi-Chr9:22282314 Bhi05g01075 Bhi-Chr5:38774445 8.75E-07 transposed
Bhi11g02015 Bhi-Chr11:57382724 Bhi05g01075 Bhi-Chr5:38774445 1.52E-07 transposed
Bhi01g01683 Bhi-Chr1:35356925 Bhi05g01075 Bhi-Chr5:38774445 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01075 K13126 - csv:101223017 1201.04