Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01078 TTAATTCATTCGAATAATTCCTTCAATTCTTTTAATTTTTTTAATTCTTTACGAATCTCCGCCGCAAAAAATCAAAGAAAAGAACACATGGCTTCGATTTCTACGCCGTACGTTCCCTCTGTTCTTCCTAATTCACGATTGCTGCAGACGCAATTCCGGCTGACTTACGCCGGCGCCGGGATTAATTCATCGCCGTCGAGTCTGTTTCGGTCTCCGGCTGTCGCTTTGGCATTTTCCGGCCACCGTGTGGCCAGTTCCTCACAGTTCAGGATTGGATCTTATACGGTTGGGGATTTCATGACGAAGAAGGGAAATCTGCAGGTTCTTAAGCCATCTACGAGTGTTGACGAAGCATTGGAGGTTCTGGTGGAGAAGAGTCTATCTGGATTTCCTGTAGTTGATGACGACTGGAAACTGGTTGGCGTTGTCTCAGATTATGATTTGTTAGCCTTGGACTCAATTTCAGGTGTGGGTGATGTTGAGGCTAATATATTCCCAGATGTCAACAGTAGCTGGAAAAGCTTCAAGTTGATACAGAAATTGTTGAGCAAGAAGAATGGGGAAGTTGTAGGAGACTTGATGACACCTGCTCCATTGGTTGTTCGTGAAACCATGAACTTGGAAAGTGCTGCCAGGCTGTTGCTTGAAACAAAGTTCCACCTTTTACCAGTTGTAGATTGTGAAGGGAAGCTGATGGGGATCATTACAAGAGAAGATATAGTGAGAGCCGGTCTTCAGATGAAGCGTACACATTCAAAAGAGTTGATATGATTGAAAAGATACATTTTAAAGATGATAAGATGTAGAAGGCTCATTTGGAATGAAACACACAATGTTGGGTATTTATATAGATAGGAATCACCCATTATTTTTTATAGGCCCATAACAATTTTGACTCTCTCTAGCATCATTCATTTATCCCATAGTTTATTGATATGTATAGTTTATTAAGAGGTTCAAAACTTTTTCTTTTAGAACAATTAATATGGAGTCAATATATCATTGAGTAATCACTTAGAAAATAAATAAAATACATTTAAAAATGAATGTAATAAATTGA 1060 39.06 MASISTPYVPSVLPNSRLLQTQFRLTYAGAGINSSPSSLFRSPAVALAFSGHRVASSSQFRIGSYTVGDFMTKKGNLQVLKPSTSVDEALEVLVEKSLSGFPVVDDDWKLVGVVSDYDLLALDSISGVGDVEANIFPDVNSSWKSFKLIQKLLSKKNGEVVGDLMTPAPLVVRETMNLESAARLLLETKFHLLPVVDCEGKLMGIITREDIVRAGLQMKRTHSKELI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38928806 38933577 + XM_039032477.1 Bhi05g01078 35288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01078 227 ProSiteProfiles CBS domain profile. 165 225 IPR000644 -
Bhi05g01078 227 Pfam CBS domain 67 121 IPR000644 -
Bhi05g01078 227 Pfam CBS domain 161 214 IPR000644 -
Bhi05g01078 227 ProSiteProfiles CBS domain profile. 71 131 IPR000644 -
Bhi05g01078 227 SMART cbs_1 76 124 IPR000644 -
Bhi05g01078 227 SMART cbs_1 168 216 IPR000644 -
Bhi05g01078 227 Gene3D - 63 222 IPR046342 -
Bhi05g01078 227 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 46 222 - -
Bhi05g01078 227 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE ISOFORM X1 46 222 - -
Bhi05g01078 227 SUPERFAMILY CBS-domain pair 58 214 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01078 - - - csv:101203218 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01078 Bhi-Chr5:38928806 Bhi08g00069 Bhi-Chr8:3015171 3.23E-81 dispersed
Bhi01g01684 Bhi-Chr1:35458786 Bhi05g01078 Bhi-Chr5:38928806 2.01E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01078 Bhi_Chr05 FPKM 80.899071 75.31456 11.638249 9.772585 4.814497 5.52071 4.560039 66.426682 64.976517 65.445618