Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01088 CCCATTCCTTCAAAACCACGGCGATTTTCAGTTTCACCGCTCCACCTCCCTCTCTCTGTTGCTCCCTCCCACGTTCGAAACCCTAAATCGACTTCCCTCTTTGAAAATTTCTCACCCTTTTTCGCCTTGGATTGTTCAGCTATTGTTGTGTTTCTCTGGACGAGGAGTAATGCTTATGTGGGGTTCTTGACACTATCTCTAGTCATATAATGGATCCAAATTCTACTGATTCCCAAACATCACCTACTGTTAATTCCTCGGAAACTAAGCCGCCAGAAGTACGGCCTCAGGCTCCTGCTACCACTGGAATGGATAATGTAGCCCGTGATGCAACATCTAAGCTATCTCCAAGTGGCATAACTTCATGGGCGAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGTTGGAGCGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTGTCTCCAAAATCATCTGCTCCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAGCCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCTATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGTTATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCGGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCGCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTAGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTTAAGTTCTTTCCAACCGCTGAAGAATCCATCGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGCCTGATCTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAACCAAAAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTTAAGGTTCATTTCCATGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACGAATGATCTTGATGGGTTCGACAAGAGGAAACTACCGTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCACCCAACATGGACAATACTACCAAAAAGTCGGATGAAAGCTCAGGCTCAAAACCTTCTGCAGCGGATGGAAATGAAGTTTCTGGGAACCAAAACAGAAAATCAGGAACTAATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCTGGTTCAGGGGCTGAAGGATCAGCTGTCAAGACAACATCTAAATCTCAAACGAGTATGACTTCATCGGATGATGTTGCGAGTTTATCACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGTGCTAAACAGACTGCTCCTGCCAGCGATAAAAAAGGTGACGGAGTCGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGACTAAATGAGAAGGCACAATGTTATTCGCCCCAAGCCACGGCCCATCGTCTGTACATAAAAACCGTGCTGCAGGTGAACCTTAAGATTCATTCATTTGGGTTGTAAATTCAAAGTCTGTCTCAGTATCTGGTTTATTGTTGAATTGAGATAGCATGTCAAAAAAAAAAAAAAAAGAAGTTATTTAAGTTCGTTTTGAAGACGATACTGTTCTATAAAGTTCAATAAAGCTCAAGTGCAGAAGACTGTTTGACATGGTTTTTCTGTCATTTAGGCTTGTAATTTGCTGAATCAGCTTGTCTTATCTTGTAGAGTGCCTTTGGCCATGTGGACAAATGAAATGGATTTTAATTTTGGAAAAAA 2410 42.12 MDPNSTDSQTSPTVNSSETKPPEVRPQAPATTGMDNVARDATSKLSPSGITSWAKNLKISQPQSASQVGATDNAAGKSAFARFTSGLGLNLSPKSSAPPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKMHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPSAADGNEVSGNQNRKSGTNDKDDVFSDSESEGGSSKSKKEATSGSGAEGSAVKTTSKSQTSMTSSDDVASLSHATKQVSLGDGGAKQTAPASDKKGDGVGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESD 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39354643 39361524 + XM_039032190.1 Bhi05g01088 35298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01088 614 Gene3D - 330 460 - -
Bhi05g01088 614 CDD PTP_PTEN 156 321 IPR045101 GO:0016791
Bhi05g01088 614 ProSiteProfiles Phosphatase tensin-type domain profile. 146 325 IPR029023 -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 457 594 - -
Bhi05g01088 614 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 614 - -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 90 116 - -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 515 555 - -
Bhi05g01088 614 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 260 299 IPR000387 GO:0016311|GO:0016791
Bhi05g01088 614 SMART PTEN_C2_2 330 458 IPR014020 -
Bhi05g01088 614 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Bhi05g01088 614 MobiDBLite consensus disorder prediction 458 493 - -
Bhi05g01088 614 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 401 456 IPR035892 -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 1 22 - -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 494 514 - -
Bhi05g01088 614 Gene3D Protein tyrosine phosphatase superfamily 131 328 IPR029021 -
Bhi05g01088 614 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 614 - -
Bhi05g01088 614 MobiDBLite consensus disorder prediction 1 49 - -
Bhi05g01088 614 ProSiteProfiles C2 tensin-type domain profile. 332 459 IPR014020 -
Bhi05g01088 614 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 327 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01088 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101222304 1152.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00963 Bhi-Chr3:18342305 Bhi05g01088 Bhi-Chr5:39354643 0 dispersed
Bhi05g01088 Bhi-Chr5:39354643 Bhi11g02948 Bhi-Chr11:79506552 3.27E-45 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi09g01578 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi09g01577 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi02g00621 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.9 0.0e+00 1097.0
Bhi12g01807 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01805 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01806 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi05g02087 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi05g02088 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi07g00747 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 2.3e-114 409.5
Bhi07g00476 . 99 325 Protein tyrosine phosphatase (PTP) family AT3G10940 78.1 1.9e-108 389.8
Bhi11g01647 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01648 . 2 450 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01646 . 141 550 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 8.9e-185 644.0
Bhi10g01060 CCT 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.5e-75 280.4
Bhi05g02096 . 28 236 Protein tyrosine phosphatase (PTP) family AT2G32960 62.6 1.7e-71 266.9
Bhi05g02097 CCT 28 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.1 3.2e-70 262.7
Bhi02g01339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.0e-55 212.2
Bhi11g00051 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.6e-101 367.1
Bhi06g01678 . 106 357 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 1.2e-80 297.7
Bhi06g01678 . 121 312 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 2.0e-45 179.9
Bhi10g01060 CCT 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 2.5e-78 289.3
Bhi05g02097 CCT 27 206 Protein tyrosine phosphatase (PTP) family AT4G03960 71.7 5.3e-73 271.6
Bhi05g02096 . 27 236 Protein tyrosine phosphatase (PTP) family AT4G03960 61.4 3.0e-68 255.8
Bhi02g01339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 6.3e-58 221.5
Bhi02g01339 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 1.7e-79 293.1
Bhi10g01060 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 2.1e-56 216.5
Bhi05g02097 CCT 35 201 Protein tyrosine phosphatase (PTP) family AT3G02800 56.9 1.5e-54 210.3
Bhi07g00941 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00939 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00938 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00937 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00940 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi05g01088 . 33 614 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.8e-220 761.1
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G19420 62.2 6.6e-199 691.4
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi10g00068 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.8 2.1e-69 260.0
Bhi11g00140 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi11g00141 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi03g02108 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 2.3e-285 978.8
Bhi03g02108 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.0e-258 890.2
Bhi03g02108 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.9 8.6e-186 647.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01088 Bhi_Chr05 FPKM 20.437458 20.168089 29.247543 27.252312 20.198778 24.10182 23.390345 32.467495 33.402908 30.712856
       

Metabolome

Select Formula Compounds CID Class I Class II CAS cpd_ID kegg_map
C30H44O7 Cucurbitacin D 5281318 Terpenoids Triterpene 3877-86-9 C08796 ko00996,ko01110