Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01124 CTTTCTCACTCTTCCCAATCCATTATTTCTCTCTTCATAATTCACATTTCAATTATATTCCCATTAAAACAAAACAAGAAAAGAACAAGATACTGTCACACTCTCTTCTCTACTGTCATGCTCATGGCCTCCGACCACCCCGCCGCCGCCGCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCCGTCATCGTCGACGCCCTCACCCAAGTCATTTCCGGCGCCGCCTCTTCCGGCCTCCAGTTCCACCACGACCATTTCCACCGCCTCCTCTTCCCTCCCAGCTCCTCCGCCCCTGCTGCCTTCTCCTCCTCTTCAGATTTCGATACGTGTCCCGTCTGTAAAATCAATGGCTGCTTGGGTTGCAATTTCTTCTCCGCCACTGCCTCAACCTCCGCCGCCACCAACAACAACAACAATCCCGGCCGCCGTGTCAAGCGTTTGAAGAAGAATTATAGAGGCGTCCGCCAACGCCCTTGGGGGAAATGGGCCGCCGAAATCCGTGACCCGAAACGTGCCCAACGTGTATGGCTTGGTACCTTCAATACCGCCGAAGATGCCGCACGTGCTTACGATGAAGCTGCTATTAGATTCCGTGGCCCACGTGCCAAACTCAATTTCCCCTTCCCTGATAATTCCTTGACCACATTCCGTTCTTCTCCTCCGCCGGCTTCCACCACCACCTCCGCCTCTACCTCCACCGCCGCCGTAGCAGGAGCTCCAAGAACGTCGTCATCAATGAAAATCGAGACCCAAAATGACATCATATTACCGGAGATCTTCAACGACGACGACGACATCCAGAGATTGCTCATGGATTTTGCTGGTCAATCAAGAAGCTGGTAAAATCAAATTCAAAATTGAGAACAACAAAATTCTTTCAACTATTTTTTTTTTACAATTAGGGAAAGAATATACTTTTTGTTTACTACAGTCAAATTATTTGTTCTTAGAAATTGTAAAATAATAGTGAAATTCAGAACGAAATAAAAAAAAAAAAGTCCACTTTTTTCAAACCCCACGTACGAGCGGATCCTGAAAGTAATATTATAATACTAGATATCCAAAACCGTG 1074 47.3 MLMASDHPAAAAFRRITEEQELSVIVDALTQVISGAASSGLQFHHDHFHRLLFPPSSSAPAAFSSSSDFDTCPVCKINGCLGCNFFSATASTSAATNNNNNPGRRVKRLKKNYRGVRQRPWGKWAAEIRDPKRAQRVWLGTFNTAEDAARAYDEAAIRFRGPRAKLNFPFPDNSLTTFRSSPPPASTTTSASTSTAAVAGAPRTSSSMKIETQNDIILPEIFNDDDDIQRLLMDFAGQSRSW 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40565766 40566839 + XM_039032475.1 Bhi05g01124 35334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01124 242 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Bhi05g01124 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 208 - -
Bhi05g01124 242 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Bhi05g01124 242 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Bhi05g01124 242 MobiDBLite consensus disorder prediction 175 207 - -
Bhi05g01124 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 14 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01124 - - - bhj:120078250 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01846 Bhi-Chr3:39154570 Bhi05g01124 Bhi-Chr5:40565766 1.27E-30 dispersed
Bhi05g01124 Bhi-Chr5:40565766 Bhi01g00429 Bhi-Chr1:7381824 1.40E-27 dispersed
Bhi12g00515 Bhi-Chr12:16495962 Bhi05g01124 Bhi-Chr5:40565766 1.03E-23 dispersed
Bhi05g01124 Bhi-Chr5:40565766 Bhi09g00274 Bhi-Chr9:5718487 3.95E-27 transposed
Bhi05g01124 Bhi-Chr5:40565766 Bhi12g02034 Bhi-Chr12:63493325 1.01E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1180 PF00847 AP2 3.10E-15 CL0081 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01124 Bhi_Chr05 FPKM 83.136108 73.155037 79.514168 82.252663 48.992153 50.260334 49.928036 73.177292 72.381294 69.704437