Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01163 TAAATCCGAAAAAATGGGAAAACAAAACAAAAAGTAAATAAATTCCGACGAAAAAACGGATTCGAAGTTCTTCTTCTTCCTCTTCTTGCTGGGAATTTTGTTGTTCATACAAAATTAGAATTTTCCCTCCAGCTGATGTACCGGCGGGAAGGGTTTTTCTGGCAGTTCCGGCAGGTATCAATCGTCCATTCGAATCGCTTCTGCGAAATTCGAGATACCGCTTTTGTGGAACTGGATTACTCTTTCATTCAGGTGCTTTAGAGAGGATTTTGTTGCGTTTCAGTAGCAATGAAGGCCATGGCGACCCTGCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTCTGATACTAGTAAGTCAATGTGGATGAATGTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATTCTGTTCAATGAGGTAGAGTTCCGTAGAAAGATCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGCTATCTGTTAATGACTCGCGCCTTTCTTCAGCGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCCGTGGAGGCTGCAATGAAGGATTTCATTGATAAAATCTTGAAGGATTTTGTGGTTGATTTATGGTATTCAGAAATAACCCCAGACAAAGAGTTTCCTGAGCAGATACATGCGTTAATCATGGATGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATTAACCTTGTTGACTTGCTCACGAGAGATGTTGTTGATTTAGTAGGTGATCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTTGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATAGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGACTCATGAGTGGAGTGTTGACTTCAGTTCTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGGTGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCTGTGATAGGTGGTCAACAACAAACTCATTCTTCAGATGTTGACAAAGACCATTCTTCTACTGCTGGATTTGTACATGATGAAGATTTGAACAGAAGGAACTCATCTTTAAATCCAGGGATTGGTTCAGAGCTTGCTAAAGTTAACAATAAAAAAGAAATCAGCTCTGATTACATGTTCCAGGATGAGCCTTTGCAACTGAGACATGGTGATTGGGGCCGTGCGTTGAATGCAGCCACCCAAAGGAGAACTGAAGTTCTCATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGAAACTATAAGAAGAAAGAAAATAGGATCATTAAAGTAGGAGATTCTGAATCTATGGCTACGACAAAGAATTCTGGAACAAGTATCATGCAGCCTGCAACAACAACGACAACGAGGGATGAAATGTTGACTGGCAAGCATCGTTCTTCTACTGGGCCAGAAGAAAAGGCAATAATAGTTAGGAGAACACCTGTAAGACATTCTGATTTCTTTTTGACCTCCAAACCAGGTGATGAGAACAAAATTGGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGCAAAGTTTATTGCTAATGAATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAATTCAACTCAAGAGATCCAATAGTACTTCTGCTTTGACAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCTATTATATCAGATTTCTATGGTCCCAATTTTCGAAAGCATGGTGAAGAGCCCCTTGCTAAGAGTGCCTCGGATGTGGTGATCCAAAAAGAAGGTCTACTTGTTCCCAAACTTAGGAGTCGGGTGATGGGCGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGGTACCGAAATTTTGAGCGACTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAGCGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCCGAGCAGCATGAAGTATGGGACTTTTTAAGTGTTTCCTCAAAGAACTATTCTTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGATGCTATGGATGACATTGTACGCCAGTTTAAAGGGGTTTCCGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCGTCAAATTATGACCGGAAGTTTTCGTTTAATTCAGCAGACTTAAGCAAATGTGTTTCTGCACAATATAATTTAGAAATAGCTAATAACCTGTCTGACGAGGAAGGTGAGCAAATTCAAAATAAAAAATGTGAAAAGGTTAGTGGATGGCATTCGGACAATGAATTAAATTCTAAAAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCGGTTAAATTAGTTGTTGAGAAGAAGAATGATCTAGATTTGAAGTCTGGGACCAGCCATGGAGGATTTTCACAAATTTCATATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTAAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTCAGGCAAATTCACTGGCTACGGAGAGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAACATTCTTTATACAATTGAGAAATGCTCAAAGTGAAGATGATGATTCTCAATCAAGTCGAACTGATGGAAGTAAGATCCCTAAGCCTGGATCATTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCCAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCGACACCATTGGTAAGCTTGATAGGACACAAGCAGTACAAAAGATGTGCAAAAGATATATACTACTTCACTCAGTCGACGATCTGTGTGAAGCAACTTGGGTATGGATTACTTGAACTATTGCTCATATCACTTTTCCCTGAGCTACGGAATTTAGTTCTGGAGATTCATGATAAATCACACGTCTCGCAACCAGTTTAGTGAGTAAAAACAGTACTCTACGACCTCTGTTCCAGGTTGTGCCTTCTTCTTCTTCCTCCAATCCCCAACCCAGAATCTCAAGTTTTTTTTTGTCTTAATCTAGCATTTAGGTTCCCTCAGTTTTGATGTTGATAGAAGTATTCAAGTGATTGACACTATCGGGAGTTTTGTGGATTGCTGGAAATTCTTTTGTGAATAGAAATGATTCTGCTTGTCCTTTTTATTTTTATTTTTATTTTTAACTGTATAGAATTTTAGTTTTAGGGTGTGTATAGAATTAGTGGTACAGCAGGTGATGGAAAATATTTCAAATCTTGTTCTATTGTAATTTATGATCCTTTCTCCTCATGCTCTGTTGATTCAACTTTTGATTGATATTGAAAATTATTTATTCATTATTCAA 3773 40.05 MWMNVPLAILLVSALRILFNEVEFRRKIRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPEQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLIASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVVQPLMNFASPGCINELIECIVLATRAENDSVIGGQQQTHSSDVDKDHSSTAGFVHDEDLNRRNSSLNPGIGSELAKVNNKKEISSDYMFQDEPLQLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENRIIKVGDSESMATTKNSGTSIMQPATTTTTRDEMLTGKHRSSTGPEEKAIIVRRTPVRHSDFFLTSKPGDENKIGFQSSLELQKDSSIDAKFIANELKDVDNLTPASATKIQLKRSNSTSALTTEVSVEKTSTEGGRSIISDFYGPNFRKHGEEPLAKSASDVVIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAMDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSKCVSAQYNLEIANNLSDEEGEQIQNKKCEKVSGWHSDNELNSKSFPPRVIKRGEESVKLVVEKKNDLDLKSGTSHGGFSQISYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGTFFIQLRNAQSEDDDSQSSRTDGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLISLFPELRNLVLEIHDKSHVSQPV 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41630348 41645516 + XM_039032119.1 Bhi05g01163 35373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01163 1002 ProSiteProfiles PX domain profile. 534 646 IPR001683 GO:0035091
Bhi05g01163 1002 CDD PX_SNX19_like_plant 536 640 - -
Bhi05g01163 1002 ProSiteProfiles PXA domain profile. 67 250 IPR003114 -
Bhi05g01163 1002 SUPERFAMILY PX domain 542 645 IPR036871 GO:0035091
Bhi05g01163 1002 PANTHER PX SERINE/THREONINE KINASE PXK 1 1001 - -
Bhi05g01163 1002 SMART PX_2 534 642 IPR001683 GO:0035091
Bhi05g01163 1002 Pfam PX domain 565 641 IPR001683 GO:0035091
Bhi05g01163 1002 Pfam PXA domain 67 243 IPR003114 -
Bhi05g01163 1002 Pfam Sorting nexin C terminal 830 963 IPR013937 -
Bhi05g01163 1002 SMART PXA_3 67 250 IPR003114 -
Bhi05g01163 1002 MobiDBLite consensus disorder prediction 892 912 - -
Bhi05g01163 1002 Gene3D - 537 651 IPR036871 GO:0035091
Bhi05g01163 1002 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 1 1001 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01163 K17925 SNX13; sorting nexin-13 - csv:101222929 1817.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01163 Bhi-Chr5:41630348 Bhi09g00154 Bhi-Chr9:3431035 1.90E-55 dispersed
Bhi05g01162 Bhi-Chr5:41630348 Bhi05g01163 Bhi-Chr5:41630348 0 tandem
Bhi05g01163 Bhi-Chr5:41630348 Bhi05g01164 Bhi-Chr5:41630348 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34