Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01201 TTTTACAATTTGCTCCAAAATACAGATATATTGAGCTTAATATCGAGAGTGAGACGGAGAGTGAAGAACAAAAACGAGATTCGAAGCACAATTTACAAGCGAGTCAATAGCGTAAATTCAAGTAGATGCTAAACCCAGCAAAAGTTGACCAAGTTGATCATTTTTCATTTGGGAAAATTTTTGGTCTCAATCCGTAAAATTTCCCATTAATCATTTCAGTATTTCTTCTCTGATTTCAAACCAGCAGAAGAACCAAATTCAACGCTGGTCTTCGAGTTCAGAGTTTCATTGAAAGGCTTGGAGATTGGAAGCCATGGAAAGCAGTGCTCAGAGGCGGATCAATTTGATTCACCGTCACCTTCTTTCGCTGCCGTGTGAGTTCAACAACGCTCTTAATCCGGCGCCAACGAATAGTGGGAGCGGGGTAGCTGAGCCTGTGATTGTTGGAGGTATGGTGCTGGATATTCACGCCATACCGTCCATTTCCGCCGTTCCTAGGTCAACTACTCCCGGCAAGATCAATTATATATTAGGTGGTGTAGCACGGAATGTTGCTGAATGCATGTCAAAGCTTGGGACCAACCCTTTCCTGATTAGTGTGGTGGGACATGACATGGCAGGGAACCTCTTGTTTGAGAATTGGAGATTGGCAGGGATATCAACAGAAGGCATTCGGAAGCAGAAAGACATCAACACTGCTGTTGTGTGTGCTGTAGTTGATGTCCATGGAGAATTGGCAGCTGCTGTGGCAAGTGTGGAAGCTATTGAAAAATTTCTCACACCTGATTGGATCGAGCAATTCAAGTCCAATATTCGAGCTGCACCAGTGCTTATGGTTGATGCAAATCTAAACCCATTTGCTCTGGAAGTCTCTTGCCAAATTGCTGCCGAGTATAATACTCCAGTGTGGTTTGAGCCTGTGTCAGTTGCTAAATCAAGAAGGATTGCTTCAGTTGTCAAGTATATAAGTTTTACTTCGCCTAATGAAGATGAACTTATCGCCATGGCCAATGCGTTATCTGGTCAAGATTTGTTTTCTCCCATCAAACAAGATAACAGCATTGCAATTGAATCTTTTTTCGAACAATTGAAATCTGCTGCATGGGTTTTGCTTGAGAAAGGTATCAAGGTCGTCATTCTGACAGTTGGTTCTCGTGGGGTGTTGGTTTGTTCTAAAGGACGACCAAGCTTCATGAAAATTTCTTCCAAAGAAGAAATCAACAAGGACAGATCCAGCAGCCAACTATTTAGAACTTTAGCTACGAGTTGTCCACCAAACATGTATGCTGTTTCTCCTGAAACCGAGAAAAGCTCTTTTCTTTTTGCAATGCACTTCCCTGCCCTTCCTGCTTCAGTAGTGAGGCTTACAGGCTGCGGAGATTGTTTAGTTGGGGGAATGCTTGCTTCTATTTGTGCTGGATTAAATATCTACCAAAGTACAGCCATTGGAATTGCAGCTGCCAAAGCCGCTGTCGAGACCGAAAATAATGTTCCTCAGGAATTTCATTCAGCCAAAATTGCAGATGATGCTAGGTTGGTGTACAAAGCAGGCAGATTTTATTTGATACATGGGTTACTGAGCCTTACCCAAGCCATCAAATCCGGATTTACACCGACCATTTTCACATCGAACCAACTCATAACCTTATATGCCAAACATGGTCTCCTTAATGATGCCCAGAAAATGTTCGACGAAATGCCTGAACGGAATGTCTTCTCATGGAATGCTATAATAGCAGCGTATCTTAAGTCTCAGAACTTGACACAAGCGCGGGCATTGTTTGACTCCGCTGTCTATAGAGATTTGGTTACTTACAACTCTATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCCCTTGGGCTTTTTAGGAAAATGCAAACGGCACCTGATATGATCAGAATTGATGACGTCAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGGTTTCTTATGGAAAGCAGTTGCATTCCTTCATGATGAAGACTGCTAATGATTTAAGTGTGTTTGCTGCAAGTTCGCTGATTGATATGTACTCTAAGTGTGGATATTTTAAAGACGCCTGTAGAGTTTATTATGGATGTGGTGAGGTGGTTGATTTGGTCTCTAGAAATGCCATGGTTGCAGCTTGTTGTAGAGAAGGGGAGATAAATGTGGCTATGGATCTTTTCTGGAAGGAATTGGAGCGAAATGACGCTGTAGCGTGGAACACGATGATTTCGGGTTTTGTTCAGAATGGTTATGAACAAGAATCATTGAAGTTATTCGTTCGTATGGCGGATGAAACGGTTGGGTGGAACGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTGAGGAGCTTGAAGTATGGAAAGGAAGTCCATGCTTATGTTTTGAAGAATGGGCTGATTGTCAATCCCTTCATTGGCAGTGGACTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCAGAGTCAGTTAATTCAGAATTGAGGATGCGAAATGTATATTCAATCACTTCAATGATTGTTGGCTATTCATCTCAAGGTAACATGGCAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTTGTCTGGACTGCTTTATTTTCTGGTTATGTTAAATTGCAGCAGTGTGAAGCAGTTTTTGAACTTTTAACTGAATATAGGAAGGAGGCAACAGTTCCTGATGTCCTAATTCTTCTCAGCATTATTGGCGCTTGTGCTATACAAGCTGCTCTGGCTCCCGGGAAGCAGATACACGGTTACATAGTCCGAGCAGGCATCAAATTGGATACGAAACTGACAAGTTCGTTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAAAGGATTTTTAGAGAAGTTACTGATAAGGATTCCATTATTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGATGCAGTCCAGCTTTTCAAGGAAATGATGGAAAATGATCTCAAACCAGATGCAATCACTTTCGTTGCACTACTTTCTGCATGTCGACATGGCGGTTCGGTAGAACTAGGCGAACATTTTTTTGATTCTATGTCTAGTGATCACAATATTATTCCTGAAATCGATCATTATGCTTGTATGATTGATTTGTATGGAAGGGCTAATCAACTAGATAAGGCATTGGAATTCATGAAAACGATTCCCATACAGTTGGATGCTGTCATATGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGAAATGCTGAACTTGCAAGAAAAGCAGAAGATAAACTGTTGGTAATCGAAGGAGAAAACGGAGCTCGATACGTGCAATTAGCTAATGTCTATGCTGCAGAAGGAGACTGGGAGCAGATGGGAAGAATAAGGAAGAAAATGAAAGGAAAGGAGGTTAAGAAGAATGCTGGTTGTAGTTGGGTTTTTGTGGAAAATAAGTTCCATGTATTCATTTCTGGTGACAGATTTCACTCAAAAAGTGAGGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGCTACTTGACAAAGAGGAATCATTTTGCTAATGTCAAGCTTCAGCCATTAATTTTTCCATCTGAAGGTTCTAAAATTTGTATGTGAAAGATATTGATTTACCACATCGTAATCACTTTATTTCAAAGTTGGAAGC 3678 41.05 MESSAQRRINLIHRHLLSLPCEFNNALNPAPTNSGSGVAEPVIVGGMVLDIHAIPSISAVPRSTTPGKINYILGGVARNVAECMSKLGTNPFLISVVGHDMAGNLLFENWRLAGISTEGIRKQKDINTAVVCAVVDVHGELAAAVASVEAIEKFLTPDWIEQFKSNIRAAPVLMVDANLNPFALEVSCQIAAEYNTPVWFEPVSVAKSRRIASVVKYISFTSPNEDELIAMANALSGQDLFSPIKQDNSIAIESFFEQLKSAAWVLLEKGIKVVILTVGSRGVLVCSKGRPSFMKISSKEEINKDRSSSQLFRTLATSCPPNMYAVSPETEKSSFLFAMHFPALPASVVRLTGCGDCLVGGMLASICAGLNIYQSTAIGIAAAKAAVETENNVPQEFHSAKIADDARLVYKAGRFYLIHGLLSLTQAIKSGFTPTIFTSNQLITLYAKHGLLNDAQKMFDEMPERNVFSWNAIIAAYLKSQNLTQARALFDSAVYRDLVTYNSMLSGYVSSDGYEAQALGLFRKMQTAPDMIRIDDVSLTIMLNLTAKLCVVSYGKQLHSFMMKTANDLSVFAASSLIDMYSKCGYFKDACRVYYGCGEVVDLVSRNAMVAACCREGEINVAMDLFWKELERNDAVAWNTMISGFVQNGYEQESLKLFVRMADETVGWNEHTFASVLSACSNLRSLKYGKEVHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVNSELRMRNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFSGYVKLQQCEAVFELLTEYRKEATVPDVLILLSIIGACAIQAALAPGKQIHGYIVRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENDAVQLFKEMMENDLKPDAITFVALLSACRHGGSVELGEHFFDSMSSDHNIIPEIDHYACMIDLYGRANQLDKALEFMKTIPIQLDAVIWGAFLNACRINGNAELARKAEDKLLVIEGENGARYVQLANVYAAEGDWEQMGRIRKKMKGKEVKKNAGCSWVFVENKFHVFISGDRFHSKSEAIYSTLASLTDELLDKEESFC 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42595815 42605422 - XM_039031224.1 Bhi05g01201 35411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 633 IPR002885 -
Bhi05g01201 1086 SUPERFAMILY Ribokinase-like 42 392 IPR029056 -
Bhi05g01201 1086 Gene3D - 39 409 IPR029056 -
Bhi05g01201 1086 Pfam pfkB family carbohydrate kinase 44 296 IPR011611 -
Bhi05g01201 1086 Pfam PPR repeat family 866 913 IPR002885 -
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Bhi05g01201 1086 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 74 98 IPR002173 GO:0016773
Bhi05g01201 1086 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 481 761 - -
Bhi05g01201 1086 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 425 628 - -
Bhi05g01201 1086 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 626 1058 - -
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 740 766 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 942 963 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 604 626 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 575 594 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 438 467 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 499 526 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 636 663 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 768 792 IPR002885 -
Bhi05g01201 1086 Pfam PPR repeat 468 492 IPR002885 -
Bhi05g01201 1086 Gene3D Tetratricopeptide repeat domain 410 530 IPR011990 GO:0005515
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 867 901 IPR002885 -
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 664 IPR002885 -
Bhi05g01201 1086 Gene3D Tetratricopeptide repeat domain 552 698 IPR011990 GO:0005515
Bhi05g01201 1086 Gene3D Tetratricopeptide repeat domain 699 822 IPR011990 GO:0005515
Bhi05g01201 1086 Gene3D Tetratricopeptide repeat domain 823 916 IPR011990 GO:0005515
Bhi05g01201 1086 Gene3D Tetratricopeptide repeat domain 917 1047 IPR011990 GO:0005515
Bhi05g01201 1086 CDD YeiC_kinase_like 40 370 - -
Bhi05g01201 1086 TIGRFAM PPR: pentatricopeptide repeat domain 870 903 IPR002885 -
Bhi05g01201 1086 TIGRFAM PPR: pentatricopeptide repeat domain 636 662 IPR002885 -
Bhi05g01201 1086 TIGRFAM PPR: pentatricopeptide repeat domain 737 766 IPR002885 -
Bhi05g01201 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 528 IPR002885 -
Bhi05g01201 1086 Pfam E motif 986 1045 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01201 - - - csv:101217455 1903.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01201 Bhi-Chr5:42595815 Bhi07g00774 Bhi-Chr7:28490170 1.99E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01201 Bhi_Chr05 FPKM 10.281727 12.371343 9.152319 9.084386 10.117141 10.851305 10.571555 8.831327 8.280993 8.132962