Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01232 TGGCCGTTGAAAAAGAAAGCAAAAATAATAAAGAAAAGAACTTCCCACTTCAAACCAGATTCCTATCTTGTTAACAGCCGGAGCAGCCGCCATTTCTGAGCAAAACCAAAGCCATAATGTTATCTTCTTCATCTCTGTACTCAAACCCACATCCCCACCTCCATCCTCTTCATTTCCGCCCTCCAAATCCTCTCTCCCATGTCTTCCACTTCCCCTCCACCCACAAACCCAACGCCACCGTCTCCTCCGCCGATCTCCGCCCCAACAATCCGACAGAAAAACCATCCACCAGCGTCTCCGATCACATCTATCCCAAACCCCGCAAACACAATTCCAAATCCGCCTCCCTTCTCAAGCACTACCTATCTTCCGGCGAATCCCCTAATCCACAAAACCCAGAACCCCCTTTGCCCGAAGAAGAGAGAGTGAAGCTTCTTGAGCTCTCGCTTGTGAGAAAACGAACCCCCCAATTTCCTGGATCCTTATATGTTCAATCCCCGAGTGATTTCGATGTGGGTTCTTCTCTTCCTCCCCTGCAATCTCTGTTTCGAAATGGAGGAAGTGAGTTTTATGGTGAAGATGACCGGAAGATGATAAGGAGGGCTCTCGAGATTCGCCGGAAGGTAACCTCTGAGATCTTTAAAGAGGCGATGCGAAAGGGGAAATTTGGAATTACTTACACCAACAATTTGCTTGGGTGGTTGTCTGATTTCATTGATTTTGTGATGATTCAAGCTGCGTCCATGAAACAGTCCCCTGAATTTGCTCATTTGTCGTTCAATGTTCGTGCTAAGACCGTCATTGAAGATTCAGATGTTGTACCACTTATCAGGTGGTTGAAGCATAACTCATTGTCATATCCACAGATAGGAAAGCTCATTTGCATGTCGAAGGGAAAGCTTGAATCTATTAGACGTCTTGTGGAATGGCTGAAAGGAATTCTTGTGAAGGGGGGATATCTTGGACTTACACTCACGAAAGCTGGAGGGAACATATTGGAACGCAGCAATGAGGAATTAGATGAGATTGTGGATTACTTGGAGAGTAATGGTGTTAGAATGGTTTGGATGGGATTTGTCATGAGTCGATGTCCTTACTTGTTATCTTACAGCATGGAAGAACTGAGAACTCGTGTGGAGTTCTTCTTGAATATGGGAATGAACGACAGAGACTTTGGCACAATGGTCTTTGATTACCCCAAGGTGCTTGGACAGTATACAGTTGAAGATATGAACCAAAAGGTCAACTATTTAAAGGAGTTTGGCCTTGAGATTGAGGATGTAGGAAAATTACTTGCGTACAAACCACATTTGATGAATTGTAGCATTGAGGATAAATGGAAGCCTCTTGTTAAGTATTTCTACTATCTTGGAATTTCCAAAGATGGTTTGAGGAGGATGCTTACAATCAAGCCAGTGGTTTTCTGCCTTGATCTGGAGAGAATCATTGTGCCAAAGTTCTTCAAAGACGTAGGAGTTCGAGATGACGGGATTAGTAACATGCTTGTGAAATTTCCATCATTATTGACATTCAGCCTGTACAAGAAAATTCGTCCAGTTGTCATATTCTTGATGACCAAAGCAGGAGTCAGGGAGAAAGACATTGGGAAAGTTATAGCTTTGGGGCCAGAACTTTTTGGTTATAGCATAGTACATAAGCTTGAGGTCAATCTCAAGTATTTTCTGTCGCTCGGCATATATACTCGGAATCTAGGAGAAATGATTACTGATTTTCCTATGCTGCTCCGATATAATATCGACATTCTTCGACCGAAGTATCAATATTTGCGGAGAACCATGGTTCGCCCTCTGCAAGATCTTATAGACTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGGCGCATCATCCCGAGGCATCAAGTTCTAGTTGAAAATCGTATAAATATCAATTTACGTTCTATGTTAGCTTGCACTGATGAAGAGTTTAAGAACAAGGTTGCAGATATAGTGGAAAAACGCCAAAGATTTGAATCTGGTAACGTAGATGGTTCTCTCTCCCTTGCCCATACAACTCACAACTCTATTGACTCGAGTAAAATTGATGACTTTTTGAGTGAAAATAGAGAGGAGTGATTTGATACTTAAACTTTCAAATTACCTCCCTACTTAAAAGAATATGACACAGAAGAAAAGTTCAAACTTGTTCTTATGCCACGACTATCGGGATGGATCGAGTCTTGTTTCTATGATAATTAGTAGCCATCCAACAACGTTCGAGAACAAAAGACCTTCCCAACAGAGAGAAGGTAAACAGTTAAGAAGGTTAGAACGAAACAGTGATGATTGACAAGTGTTGATCGATGCGCAGCAGAGGGATTTCAGGACCAAAAAAACGCAATAAAAGAACTACGCTGACAAGTTAAATTAGCAGTCTCAGCTAAAGACAAGGGTGGACATAAACTGTGGCTACAAAGTATCAGTGTATCACCCATATACTTCTCATAAAATTCTCTTTAATGTAACTACAATGTGGCACCCTCTGAATTGTACAGATGAGAGATGCAAGAAAAACATACTTCAGACAATGACTAATCTTTTGCCTACTAATTAAACTAATTCACTTGATGATAT 2591 41.64 MLSSSSLYSNPHPHLHPLHFRPPNPLSHVFHFPSTHKPNATVSSADLRPNNPTEKPSTSVSDHIYPKPRKHNSKSASLLKHYLSSGESPNPQNPEPPLPEEERVKLLELSLVRKRTPQFPGSLYVQSPSDFDVGSSLPPLQSLFRNGGSEFYGEDDRKMIRRALEIRRKVTSEIFKEAMRKGKFGITYTNNLLGWLSDFIDFVMIQAASMKQSPEFAHLSFNVRAKTVIEDSDVVPLIRWLKHNSLSYPQIGKLICMSKGKLESIRRLVEWLKGILVKGGYLGLTLTKAGGNILERSNEELDEIVDYLESNGVRMVWMGFVMSRCPYLLSYSMEELRTRVEFFLNMGMNDRDFGTMVFDYPKVLGQYTVEDMNQKVNYLKEFGLEIEDVGKLLAYKPHLMNCSIEDKWKPLVKYFYYLGISKDGLRRMLTIKPVVFCLDLERIIVPKFFKDVGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAGVREKDIGKVIALGPELFGYSIVHKLEVNLKYFLSLGIYTRNLGEMITDFPMLLRYNIDILRPKYQYLRRTMVRPLQDLIDFPRFFSYSLEGRIIPRHQVLVENRININLRSMLACTDEEFKNKVADIVEKRQRFESGNVDGSLSLAHTTHNSIDSSKIDDFLSENREE 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43992365 43997145 - XM_039031845.1 Bhi05g01232 35442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01232 658 MobiDBLite consensus disorder prediction 34 60 - -
Bhi05g01232 658 PANTHER CGI-12 PROTEIN-RELATED 82 634 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 354 385 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 533 563 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 390 421 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 460 492 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 426 455 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 497 528 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 284 314 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 SMART mt_12 565 596 IPR003690 GO:0003690|GO:0006355
Bhi05g01232 658 MobiDBLite consensus disorder prediction 32 76 - -
Bhi05g01232 658 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 82 634 - -
Bhi05g01232 658 Gene3D Transcription termination factor 3, mitochondrial 381 624 IPR038538 -
Bhi05g01232 658 Pfam mTERF 305 611 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01232 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101220316 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01232 Bhi-Chr5:43992365 Bhi11g01544 Bhi-Chr11:44636052 4.75E-33 dispersed
Bhi05g01231 Bhi-Chr5:43992365 Bhi05g01232 Bhi-Chr5:43992365 0 tandem
Bhi05g01232 Bhi-Chr5:43992365 Bhi05g01233 Bhi-Chr5:43992365 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1185 PF02536 mTERF 1.40E-66 No_clan Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01232 Bhi_Chr05 FPKM 14.940536 17.853294 20.226974 19.874382 39.644703 42.16497 36.268127 19.800432 20.451408 18.612597