Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01248 TTCATCATTTTACGCATCTCGTCGTATTCTTTCTTATTATTCATCCGCCATTGAAATTCCCCAAGCTCTGACCTCTGCATCAGCTTCCTTCTTAGCCCTAACCTTCTCAACACTATCTTCAACCTCTACACAAGCCCACTCTCATCTCACTTTCTCTTAATCATCACCAACTTTCCTCCGATTCGTTTTCTCTTTCAGGATTCGGTCCGTTTAAGGGTTTTGAAATATGGGATCTGTCTGTTGTGTTGCGGCTAGAGACAAGACTGTTGGTGTTGGATCTGGTAGTGACACGCAGCATAGGAATATTCGTCACTCGCCGAGTTGGAGCTTTCGATGGGATCATCCAGGTCGTGTGGTTGGTGAGGAAGTTTCTGTGAACTTGATTTCAGATGGAGTAAGCAGAAATGATAGGCCAGAGTTCAAATATGAATCCTCATATGCATCAGAAGAGGGTAGTCCATTGGAACATTTTCGTAGACAGACATGGAAAAACTCCTCAGTTTCTGAAGGAAGTACGGGGAATGTGAGGACACCTACATCAGGTTGTTCTATTTCAAGAAATGTTTCCACAGATGTTAGTTTCGAACAGGTGAAGAAAGCCACTGAATATGCGACAACTTCTATGTCTCCTGCAAAAGTATCCCTTTCAATACCTTCTACTTCATCTTTGTCAACATCCCCTCTGTCAATCCACGGCCATCTGCCTTCCACCGGTTTGACCTCGTCGAGATTGTCTCACCGTTCTCCCGGACATCGATTATTGCGTCAAGTATCTGGCAACCGCATCCCAGCATACAGATCACCAAGTAGCTACACAGTTTCAGAGGACAGGCGTGCAATCCCTGGGAGCAATGATTCATTACGGGGCTCACATGGTGGGTCTTCTGATGGTTGGTCTGTGAATGCTTTCTCTGAGCTCATGACAACTTCACATAGGGGAAGATGGTCCTTTGGTAGTGAATCCTTTGACTTTGCTCGTGAGAAGATGGTTAGATCCTGCAGCCTATTCTCGACTTCACCTTCTGCTGATACACAAACATGCGGAATTTGCTCCATGTTGTTGGTTGAGAGATCTTTATGGACCAGCCAAAAGATAATTGCTAACAATGAGCTGTCTGTCGTTGCGGTACTAACTTGTGGACATGTTTATCATGCTGAGTGTTTGGAGAATATGACACCTGAAATTAGCAAGTATGATCCAGCCTGCCCACTATGTTCATTTGGTGAGAAGCAGACACTAAGGATGTCTGAAAAGGCACTTAGAGGTGAATTAGAGTTGAAAATTAGAAATAAGAGGTTAAGGAATCGCATTGCTGATAGTGGTCTTGATGTCGAAGCTACCATGTTTGATCATTTTATAAATACTGGACAACAAGGGAAGTGCCCTAAGTTGTCCTCTAGCTCCAGTTTGAGAGGTTCCTCAGGGAAGGGTTTCTTGAGGCGTCACTTCTCCTTTGGCTCAAAGGGGGGGACTAAAGCCCTGCCAGAAAGTAACAACACAGCAAAGAGAAAGGGATTGTTATGGTCAAGATCTACTAAGATGTGACATTTTCTATAATTTCTTATGGGAGGTTCCGCAGTTAACCCCTGTTAGGTAGCTGGTACACAAAGTGGAGAATGCAAGATAGAATTGACCAAGGGGATACTACAACATCCCTGGGTTTGGATAGTTGGATAATTCTTTATGAAATTTATACAGGCTTAGTTTGTGGCGTCAACACTGTATATAGGAACGTAGGGTAAAAAAGAAGTAACAGTTCAGATAACAAGATTGAAAGATTGAATTGCATCATGACGAATTAGATTGGCGATTCTCATTCTTATCTTGTACAAATCAATATGTTTTCACGTGGACAATTGTATGCATGTGTTATGAATTCTGATA 1885 42.86 MGSVCCVAARDKTVGVGSGSDTQHRNIRHSPSWSFRWDHPGRVVGEEVSVNLISDGVSRNDRPEFKYESSYASEEGSPLEHFRRQTWKNSSVSEGSTGNVRTPTSGCSISRNVSTDVSFEQVKKATEYATTSMSPAKVSLSIPSTSSLSTSPLSIHGHLPSTGLTSSRLSHRSPGHRLLRQVSGNRIPAYRSPSSYTVSEDRRAIPGSNDSLRGSHGGSSDGWSVNAFSELMTTSHRGRWSFGSESFDFAREKMVRSCSLFSTSPSADTQTCGICSMLLVERSLWTSQKIIANNELSVVAVLTCGHVYHAECLENMTPEISKYDPACPLCSFGEKQTLRMSEKALRGELELKIRNKRLRNRIADSGLDVEATMFDHFINTGQQGKCPKLSSSSSLRGSSGKGFLRRHFSFGSKGGTKALPESNNTAKRKGLLWSRSTKM 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45295517 45298752 + XM_039031765.1 Bhi05g01248 35458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01248 439 PANTHER BNAA09G43140D PROTEIN 1 431 - -
Bhi05g01248 439 ProSiteProfiles Zinc finger RING-type profile. 272 331 IPR001841 -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 190 219 - -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 190 204 - -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 416 439 - -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 69 111 - -
Bhi05g01248 439 PANTHER EXPRESSED PROTEIN 1 431 - -
Bhi05g01248 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 332 IPR013083 -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 414 439 - -
Bhi05g01248 439 MobiDBLite consensus disorder prediction 83 111 - -
Bhi05g01248 439 SUPERFAMILY RING/U-box 268 332 - -
Bhi05g01248 439 SMART ring_2 272 330 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01248 - - - csv:101210626 795.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01248 Bhi-Chr5:45295517 Bhi05g01250 Bhi-Chr5:45295517 0 dispersed
Bhi05g01247 Bhi-Chr5:45295517 Bhi05g01248 Bhi-Chr5:45295517 0 tandem
Bhi05g01248 Bhi-Chr5:45295517 Bhi05g01249 Bhi-Chr5:45295517 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01248 Bhi_Chr05 FPKM 13.077191 12.692815 13.751825 13.052258 15.76219 15.955178 15.625682 18.084225 18.043846 18.956656