Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01262 TCAAATTGAAAAAACGAGCAAATCCTCGAAGCGGAGCGAAACTCAATTTCTTTTTTTTCCCTCCTGCAAACGCTCTTATTTGTTGGACCGTAAAAAAAGAAAAAAAATTGTGAGAGAGGGAAGTGGATCTTAAAACCCTAGGGTTTCAATTCCTTTCTAATTTATAATCCAATTCTGTTTCTAAATGGATGCCGAAGAAGATGATTCTTCGTATCACGACCAAAAATCTTCTTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGACACCAATCGGGAGCTTCAAAGCAATGAAGTACAGCATTGTGTGTCCAAGTCCTCAATTATCGAAACGGAGTTTCCATCTAATACCGGCGTGGAATCTTTACCACCCAGAGATGCAATTCTTGGCGATGAGATTCTTGCCGTGGATACTTATTCAGAGATGAAGAAGCAGGATTTGATTGAGGAGACAGAGATAGCAGAGGAGAAGGATTTTCGCAATATTATTGAGGATATGGCGGAAGATTCAGTGAAGTTGGAGATTGAGCCTGATATTGCGGAGGTGGGGTTATTGGGGAAAAGGGTTTTCGCTGATGTGAAAAACAATACAGGGGTGGCGGAGGAGGAGAAGGCTTTGAATGAATTTGCTGAAGGTGAGTTGTTACCTGAAATGGTTTTGGTTGGTGGCGCTGAAGATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAAGATACGGTCGTAGAAGGTTCAGCTACAGTTGGCTGTGCAGAGACAACGGAGAAGACGTGTCTGAGTGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTGACTGATGCTACCAATGTGGTGCAGAAGATAGAGGTGGAAGAGAATGCCGATGACCTTAATGACTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTTGCTGTGGAGGAAAGGGAATTAGGCGTCTTGGTGCAGCTGGCGGAAAACTCCGAGTTGAAAGTTAGTTTGGTAGATGAGGCTGTGGGGGAGGAGGGACGGATGGCAAATTTGGCAGGCAGAACTGGTGAAACGTTGAAGATGGAGAATGTCTCAAACACCATTGATGAGGTGGGGCTGACACATTTCGCTGTAAAAATAGGAAATGCTGAAGACAAGACTGTTGAGATGGACGGAATGTGTATGGAAGACAAGGCTACTGATGTGGCGATGATGGAGAATTTGGCAGATGAGACCCCAGAGATCAAGGGAGTGGACTTAGCAGACTACACTATTGAAGAGTTGAAGATTGAGAACGTGGAAGATAGGGAAGCGGGGGTGCAAGGATTGGCTGTGGCCGATGAGAGCCCTGTGGTTGGGAAGCTTGAGAATACAGCAGATGAGAATGCAGAGGCTGAGGGAGTAGTGCAAGTGACTGACTATGAAGTCATAAAATCGGAGAATGTAGAAGAAGACAAGACTGCACAAGGGGAGGAAATAGCTATGGCAGAAGAGAGTGCGGAGGCAGATGGCATGGTATATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGCAACCATGACATACTTGGTTGAGGAAACGGAAGCAGCAGAGGAGGTTGAAGAGATGGATGTTACAGAAGAGGTGGATGAACCAAATAAAGGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGCCTTCCAGGAAGAAGGTGGAAGAAGATGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATCAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATAAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGACATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGTTGGGAATATCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACTTTTGACGAACTTGTTCATGCAAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAAACCTGATTCACCTGGTGAGCTATGTGATGGTAATGTTGATCGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAAAAAAGAAAAGCTAAGAAAAGGTCAAAATCTCAAGCAAAGGAAATTAGTTCACCTACAATACCAGCTAAACCTGATTCTCAAGGGCTATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAATTTGTAATGCACATGAAGAATGGTGATAAGACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAGAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCTCAGACAAATGATCTCCAAGGGAGTGTTGCTGATACTGAATCGAGTCAGTTGGAGGCTGATGGCGCGGATGGGTTGGGAAAGACTAAGAAAGAGAAAAAACGCAGGACGCGGAAAAAAGGTGATGATAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCCATTGATACTCACAACATTAATTTAATTTACTTAAAGCGTAATTTGGTGGAATATCTGATCGAAGATGAGGAGAGTTTTCTTGTAAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGCAAAGCATCCGAGCCTTATAAAGTTGGTAAAAAGATGACTGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCGATTGATGTTATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGACTCAGACAGAGCATTAAGTGTGGAATCCTTAACCGTCTGACAGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTTCAAGATGCCAGAGTTAAGGATTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAAAAAGGCCGCCGAAAAGAGCTCAGAGAATGTGTTGAGAAACTACAGCTTTTGAAGACCCCTGAGGAGCGGCAACGCAGAATTGAGGAAATACCAGAGATACATACTGACCCAAATATGGATCCAAGTCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAAACGAGAAACCTACACCTTGTCAAGAAGCACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATCCCTGGAGCGGTACTAGAAACTTTTCTAATATGAATCGGGACATGAATAGGAACTTGTCTGGCAAAGGCTTCTCTAACCAAGGAGACGATGCCATTGGTTCTGGTGAAATAATAAACGAACATTCATGGGCTCAAGGAAGAGAGAGAGATGTTAAAAAAACAAACAAGTGGGACAAACAAGTCTCTCCTAGTTCAGAAATCACTGCTAGGAATGCCTTGTCTGGGGCCACATCTGAGAGTTCTGCTGCTGCTCACTCGGTAAATCCAGCAGTATCTCCATCTGTGGGGACTACACAAAATGCTGCTACAGTTAATGAATCGGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCATTTTCAATGGTGCAACTGCGCAAGTGGAGTAACACAGGTTATTTTCCTGCAGACTTGAGAGTATGGAGAATCTCAGACCAGCAAGAGGACTCCCTACTTTTGACCGATGTCTTAGCGGGAAAGATCCCGAAGGACGCTCCATCGACAAGTAACAGTTTCCAAGCACACCCGAGTTCTTCATTTGTTGGGAAGCCTCAGGTAGCCACCTTGCAGTCAGGTATGGATGGTCAGAATGCTGGTACTTCAAATTCACATAGTAATCAAACTTCTTATGACCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTAGACCTGCCTCGGCTTCGATAGAAGTCCCCAGGTATTCAGGAGACAGATGGTCTTCTGACCATGGTAATAAGAACTTCACAAGTCTTCCTTCTCCTACTCCCAGCTCAGGCGGAACAAAGGAGCAGCCATTTCAAGTGGCTGCGCCATTCAAGGAGGCGAAGTCACTCTCAGGAGGTGGTGGTGGTGGTTTGCACGGTTCTTCACTTATGCAAGGGTCTGAAAATGACTCATTGCGCATACATTCAGGCAGGAATTCGTCAGAAAAGGGCATGGGTTTAGGTCTTATAAATGCATTCCAAAATCATCATTCTCAGCCAGTAAGGCTATCGCCTACCATCGATGATGCTTCGGTTAATCCAGCTGCTGCAGATATTAAGAGCATTAGTGCAAATCTTCATAGTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCAAGGACAGGGGTCTGGCTCCGTCCTGAAACGGGAAACAAATGCTTCAGAGTCGTGGCAAAATGCACAATCTCTTAAAGTTGAATCGAACATTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTACGTCATTCAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCTCCCGGTTTGTCTAATTTTCCGTCCTCTGACCCTTGGCGATCTACGCCTCCTATTCCCAGTAACCCACAACACATTCAGTCTTCAACTTCGCCCAATCTTCCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCACGACCGGGTTCGGAGACTCAGAACCAAGCCTGGGGTCCAATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCACCTCCAAATGCTACTGGTATGATGTGGGGAACTGCTGCTCAAAGTTCTGGCCCTGCAGGTACAAACCCAGGTTGGATTCCACCAGGTCAAGGGCCACCAACTGGAAACAACATTCAAGGATGGCCAGCGCACCCTCCGGTAAACGCAACTCCGGGATGGGTTGCCCCCAACGTTGGACCATTGCCACCTATGAATATGAATCCCAGTTGGCCCGTCCCATCCCCGAATCAGAACATGTGGGGTAATGAGCATAGTAAAAATGGGGATAGATACTCGAACCAAAAGGACAGTGGCTCTCATGGCGGAGATCCCGGGAATGGAGGTAAATCTTGGGGGATGCAACCATCTTTTGGTGGTGGTGGTGGAAGTTCTAGGTCTCCTTACAATAGAGTGCAAAGACTGTGCAAATACCATGAAAGTGGACATTGCAAGAAAGGAGGAACTTGTGATTACAGGCACAAGTAGAAATTAGTTAATTTGGACAGTCATTAGAGATCAATTAATTTTGTATAGTCTTGTTACCATCGAGAGTTTTTCCTTGTATAACCTCCTGTTAAATGTTATACATGTGATAACTTTTGCAGTTCTTTATTATGGAAGGGTCTTGAAAAGCAAATAATTTTATTTAATCA 5727 44.33 MDAEEDDSSYHDQKSSLYVDDGNLDVKCDTNRELQSNEVQHCVSKSSIIETEFPSNTGVESLPPRDAILGDEILAVDTYSEMKKQDLIEETEIAEEKDFRNIIEDMAEDSVKLEIEPDIAEVGLLGKRVFADVKNNTGVAEEEKALNEFAEGELLPEMVLVGGAEDQVEGNVLMANFSEDTVVEGSATVGCAETTEKTCLSDVLAEETLAETTLFVQDVDVTDATNVVQKIEVEENADDLNDSKDTEVPKQENFAVEERELGVLVQLAENSELKVSLVDEAVGEEGRMANLAGRTGETLKMENVSNTIDEVGLTHFAVKIGNAEDKTVEMDGMCMEDKATDVAMMENLADETPEIKGVDLADYTIEELKIENVEDREAGVQGLAVADESPVVGKLENTADENAEAEGVVQVTDYEVIKSENVEEDKTAQGEEIAMAEESAEADGMVYLVDEGIGSEETDATMTYLVEETEAAEEVEEMDVTEEVDEPNKGSSGSKRKRGKNSKAPARVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVMLIEKNEQGNTEKGQIDFNDKNSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSKPDSPGELCDGNVDRGSDLDVSENEESGSSKKRKAKKRSKSQAKEISSPTIPAKPDSQGLSTDNNVEWASKELLEFVMHMKNGDKTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQTNDLQGSVADTESSQLEADGADGLGKTKKEKKRRTRKKGDDRGLQSNLDDYAAIDTHNINLIYLKRNLVEYLIEDEESFLVKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKVGKKMTDILLEILNLNKTEVISIDVISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRIEEIPEIHTDPNMDPSHESEDEDEADDKKRETYTLSRSTSFGRRMREPVSPGKGGSNLNDPWSGTRNFSNMNRDMNRNLSGKGFSNQGDDAIGSGEIINEHSWAQGRERDVKKTNKWDKQVSPSSEITARNALSGATSESSAAAHSVNPAVSPSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRISDQQEDSLLLTDVLAGKIPKDAPSTSNSFQAHPSSSFVGKPQVATLQSGMDGQNAGTSNSHSNQTSYDQSSGGRWKSQNEVSPTGRPASASIEVPRYSGDRWSSDHGNKNFTSLPSPTPSSGGTKEQPFQVAAPFKEAKSLSGGGGGGLHGSSLMQGSENDSLRIHSGRNSSEKGMGLGLINAFQNHHSQPVRLSPTIDDASVNPAAADIKSISANLHSLVQSINSRNPPIEAQGQGSGSVLKRETNASESWQNAQSLKVESNISSSMPPAQTLHSRWGEMSPAQNAATSFSAGSSTSSFSSPGLSNFPSSDPWRSTPPIPSNPQHIQSSTSPNLPWGMGAPEGQSTVPRPGSETQNQAWGPMPSGNPNMGWGPTAPPPNATGMMWGTAAQSSGPAGTNPGWIPPGQGPPTGNNIQGWPAHPPVNATPGWVAPNVGPLPPMNMNPSWPVPSPNQNMWGNEHSKNGDRYSNQKDSGSHGGDPGNGGKSWGMQPSFGGGGGSSRSPYNRVQRLCKYHESGHCKKGGTCDYRHK 1791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45539736 45553679 + XM_039032229.1 Bhi05g01262 35472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01262 1791 ProSiteProfiles Zinc finger PHD-type profile. 516 582 IPR019787 -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 684 703 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 826 863 - -
Bhi05g01262 1791 ProSiteProfiles SWIB/MDM2 domain profile. 733 816 IPR003121 -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 664 734 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1154 1215 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1486 1573 - -
Bhi05g01262 1791 CDD SWIB-MDM2_like 739 814 - -
Bhi05g01262 1791 SMART swib_2 734 819 IPR019835 -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1581 1596 - -
Bhi05g01262 1791 SMART rtf1 874 984 IPR004343 GO:0003677
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1049 1121 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1486 1671 - -
Bhi05g01262 1791 Gene3D - 875 1005 IPR036128 GO:0003677
Bhi05g01262 1791 SUPERFAMILY GYF domain 1212 1274 IPR035445 -
Bhi05g01262 1791 SUPERFAMILY SWIB/MDM2 domain 735 815 IPR036885 -
Bhi05g01262 1791 SUPERFAMILY FYVE/PHD zinc finger 514 563 IPR011011 -
Bhi05g01262 1791 Pfam Plus-3 domain 879 982 IPR004343 GO:0003677
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1049 1068 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1708 1724 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1173 1215 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 715 734 - -
Bhi05g01262 1791 Pfam SWIB/MDM2 domain 741 814 IPR003121 -
Bhi05g01262 1791 SUPERFAMILY Plus3-like 875 1005 IPR036128 GO:0003677
Bhi05g01262 1791 SMART PHD_3 518 564 IPR001965 -
Bhi05g01262 1791 SMART gyf_5 1222 1277 IPR003169 GO:0005515
Bhi05g01262 1791 ProSiteProfiles Plus3 domain profile. 874 1007 IPR004343 GO:0003677
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1608 1624 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1307 1436 - -
Bhi05g01262 1791 Gene3D - 1223 1281 IPR035445 -
Bhi05g01262 1791 Gene3D SWIB/MDM2 domain 728 824 IPR036885 -
Bhi05g01262 1791 ProSiteProfiles GYF domain profile. 1221 1275 IPR003169 GO:0005515
Bhi05g01262 1791 ProSitePatterns Zinc finger PHD-type signature. 519 579 IPR019786 -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1155 1172 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1364 1387 - -
Bhi05g01262 1791 CDD Bbox1 564 589 - -
Bhi05g01262 1791 CDD PHD5_NSD 518 563 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 471 509 - -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1307 1346 - -
Bhi05g01262 1791 CDD GYF 1221 1276 IPR003169 GO:0005515
Bhi05g01262 1791 ProSiteProfiles Zinc finger C3H1-type profile. 1766 1791 IPR000571 GO:0046872
Bhi05g01262 1791 Pfam GYF domain 1224 1264 IPR003169 GO:0005515
Bhi05g01262 1791 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 257 1790 - -
Bhi05g01262 1791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 609 IPR013083 -
Bhi05g01262 1791 MobiDBLite consensus disorder prediction 1703 1765 - -
Bhi05g01262 1791 PANTHER UNCHARACTERIZED 257 1790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01262 - - - csv:101218325 2959.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02429 Bhi-Chr1:59279967 Bhi05g01262 Bhi-Chr5:45539736 0 dispersed
Bhi05g01262 Bhi-Chr5:45539736 Bhi11g00791 Bhi-Chr11:21537925 1.42E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g34 . . . . . . . . . . . . . . Sed05g2290 . . Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1193 PF03126 Plus-3 6.60E-23 No_clan Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g01262 Bhi_Chr05 FPKM 6.65658 7.226488 12.677816 13.169449 18.132441 14.389474 18.772524 20.267265 18.99733 19.331871