Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01372 TATTTCTTTCTTCTTAACACATCTTTCAATATTACACTTTCCCCCAAAACTCACTCTTCTTCTCTAAAAAATCCCAGTCAGAAAAAACCCCCCAAAACAAAAACTTCACTCCTCCTCATGGCTCCAATGAACGAGGTTCCATTCCATCGGGAAGGTAAACCCCAAAAAACAAAATTTTTCTAATCAATTTCTACCCTTCTTTCTCTTTCCATTTCACATCTGCTCGTGTGAACCAAAATAAAGTACGAAGAACACTGTTTTTGTTAAGCTTAAATAGCGGGAGATCAAAAAGGGAAGGCCATGGAAGGAGGAGGATCCAGTGGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGTACCACCACCACCACCAACAACAACAATTCTAACACTCCCATGATGATGATGTTCAATAGTAATAATCCTCAAACATTGGACGACAACAACAATAACAAGATGTTCTTGCCTTTGTCGTGGTCTTCTTCTACTTCCAACAATAATAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCATCCTCATACTAACAATAATGATGTTCTTACTACTTCAACTTCTAAAGCGAAGATTATGGCTCATCCTCTCTTCCCTCGCCTTCTCGCCGCTTATGTCAACTGTCAAAAGGTGGGTGCGCCACCAGAAGTGGTGGCGAGACTAGAGCAGGCGTGTGCGGTGGCAACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCATTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTAACCAAATATGAACAAGAGTTGACCAAACCTTTTAGAGAAGCAATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTCCTTCTGATGGTTTTGAGTTGGTCAGGCAAAACGAGTGCTCGAAGGAGATTGAGGTCGATATGAACGATAACTACATCGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAGCTTCTACGCAAATATAGCGGATATCTTGGTAGCCTAAAACAAGAATTTTTGAAGAAGAAGAAGAATGGAAAGTTGCCAAAAGAAGCTCGACAACAGTTGCTCGACTGGTGGAGTCGACATTACAAATGGCCATACCCCTCGGAGTCGCAAAAGGTGGCGTTAGCGGAGTCAACAGGGCTCGACTTGAAGCAGATCAACAATTGGTTCATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGACTGTTCTTCCACTCTTTTCTGATGAGATATGTACCATTTTAATATTGCTTTTGCTTATGTTAATTAATGTCATTTCCCATTTTGTTTTA 1399 42.17 MEGGGSSGSSCSFMATCNSTTTTTNNNNSNTPMMMMFNSNNPQTLDDNNNNKMFLPLSWSSSTSNNNNNAQTQRVSAFVPHPHTNNNDVLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFREAMLFFSRIESQLKALAVPSDGFELVRQNECSKEIEVDMNDNYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47748136 47752635 - XM_039031478.1 Bhi05g01372 35582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01372 343 Gene3D - 250 312 - -
Bhi05g01372 343 Pfam KNOX1 domain 96 133 IPR005540 GO:0003677|GO:0005634
Bhi05g01372 343 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677
Bhi05g01372 343 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 334 - -
Bhi05g01372 343 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 334 - -
Bhi05g01372 343 SUPERFAMILY Homeodomain-like 247 322 IPR009057 -
Bhi05g01372 343 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981|GO:0006355
Bhi05g01372 343 SMART HOX_1 247 312 IPR001356 GO:0003677
Bhi05g01372 343 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Bhi05g01372 343 CDD homeodomain 257 309 IPR001356 GO:0003677
Bhi05g01372 343 Pfam ELK domain 225 246 IPR005539 GO:0003677
Bhi05g01372 343 MobiDBLite consensus disorder prediction 23 70 - -
Bhi05g01372 343 Pfam KNOX2 domain 145 189 IPR005541 GO:0003677|GO:0005634
Bhi05g01372 343 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
Bhi05g01372 343 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
Bhi05g01372 343 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Bhi05g01372 343 SMART ELK_2 225 246 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01372 Bhi-Chr5:47748136 Bhi09g03182 Bhi-Chr9:81520335 3.62E-84 dispersed
Bhi05g01372 Bhi-Chr5:47748136 Bhi05g01373 Bhi-Chr5:47748136 0 tandem
Bhi03g00626 Bhi-Chr3:11851260 Bhi05g01372 Bhi-Chr5:47748136 3.11E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1216 PF03791 KNOX2 4.30E-22 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01372 - - csv:101205039 541.576