Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01508 TTTTCATTATCATCTAAAAAAAGAAACCTTTTTTATTTTTTTTATTTTTAATTGGGCTAAGTCATTTTTCTCCTTCTCACACATGCTCACATCCATCCCATATCCTTCTCTTCTTCCTCTATCCATCTAAAAGAAGGGAAAGAAAAAAAAACCCAGAATCAGATTGTGAGAGTTCTAAAAAGTTTCCAGCTTTTTTGTGTTTCTCTTGCAGTAATCATTAATTTTGTTGTAATTTGAAGACCCCTTTTACCGATCTCTGTTTGTATGTTCTGGATGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTCTCTTCTCTTCCTCTTTATTCTCGTGCCGAGTATGAATTTGTGTTAGTTTCTTGAAGCTGGGGCCATGGTTAGTGGCCATACATTCCATTTAAAGGCAGTTTCTTTTAACATAATTCTGGATTTTAGCAAATAGCTTATGCGGATTTTGTTGAGGGGGAAATCATGGGGGCATGAAGCTGCATTTAGCTTGTTCATATAGTTGATTCTAGTTTTGGCAATCTAGAAGGATTTCTAAGGGAACGTTTCAAGGATCTGATTGCAGTATGGGTTACATATGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCAAGAACATTGTTATGTGATCGATGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGCTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATTTGGTCATTTGTTCTAGATCTCACTTCTGGAAGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAACGGATCTGGTGTAGATGAAAGCCATGAATTCGCAAGTGAAGATAAATCAATTTGGTATGGGTCATCTTCAATGCCTCACATTATGGACCAACCAATTACTAGGGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTTGACATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTGGAGAATGGTGGTATTGATAGTTTGTTCAGGATGAAAAACTTATCTGCTGCTAAATCTGGTTGCCCTGGCGCAGCTCCTGCAGAGGGGGTGTCAGGCGGTTTTGTTAACAATACGATGCAGCCTCCAAGCAGTAATGCAGCATCGGCAGATTCCGTAATGAGCACAAAGACTGAACCGGTCCTTTGTTATAACAATAAGCAAGAGCACTCCAGTTTATCGTTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGATCATCCAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCTCCATGGTGTTCCATGAGCACTGAGAGTTCCTTCCAGTCATCTAATCGCAGTGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATCAAACCAGAAGCTACTGAAAGTTCAACTTT 1836 41.01 MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNGSGVDESHEFASEDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELDIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSGCPGAAPAEGVSGGFVNNTMQPPSSNAASADSVMSTKTEPVLCYNNKQEHSSLSFSGMTGESSAGDHPDCGASSMLLMGEPPWCSMSTESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51443076 51447795 - XM_039031930.1 Bhi05g01508 35718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01508 407 CDD Bbox1_BBX-like 4 47 - -
Bhi05g01508 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Bhi05g01508 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Bhi05g01508 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
Bhi05g01508 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi05g01508 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bhi05g01508 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi05g01508 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01508 - - - csv:101216326 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01506 Bhi-Chr5:51443076 Bhi05g01508 Bhi-Chr5:51443076 0 dispersed
Bhi05g01508 Bhi-Chr5:51443076 Bhi10g01287 Bhi-Chr10:30472702 0 dispersed
Bhi05g01507 Bhi-Chr5:51443076 Bhi05g01508 Bhi-Chr5:51443076 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00075 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 6.6e-42 169.1
Bhi04g00075 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.9e-81 300.4
Bhi02g00794 CCT 5 373 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 7.0e-68 255.4
Bhi04g00075 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 9.9e-54 208.4
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01795 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.2 1.6e-50 197.6
Bhi05g01796 . 1 200 C2C2-CO-like Transcription Factor Family AT1G75540 55.4 6.2e-50 195.7
Bhi01g02390 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.3e-56 216.9
Bhi03g00888 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.2e-50 195.3
Bhi03g00887 . 1 110 C2C2-CO-like Transcription Factor Family AT2G21320 70.9 2.2e-43 172.9
Bhi01g02390 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.7e-57 219.9
Bhi03g00888 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.7e-49 193.4
Bhi03g00887 . 1 103 C2C2-CO-like Transcription Factor Family AT4G38960 74.5 9.0e-43 171.0
Bhi05g01795 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi05g01796 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi10g01956 . 1 109 C2C2-CO-like Transcription Factor Family AT4G39070 72.5 2.1e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1235 PF06203 CCT 2.70E-16 CL0281 Bhi TF