Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01589 AAATCTCTCCCCGTAATGCCCGTAACTACCGCAATAACCAACTGAAAAATAAAAAAATAAAAATGAAAATGAAAAATAAGAAAAAACCGCCATGTCTGTGACAGTAGTACCTCTTTGAAAGAAGAACCAATAACCGTCTCTTCGCCTACGAAATCCAAATCCTTCCGCCATTGTTACACTTTTCGGCTTTTCTTCCATTTTCAGCTCCCTTCTTCTCTCTTTAATCTCCTTATCATGAATCCACATTTCAATTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGACCTCACTCTTCCTTTTGAACTCCAAATGGTCGAAACTACCAAGCGCCGCCGTCCCCGCAAGAAAAGGTCAAGAATCGAAACCGACGACTCCACCGTCGTCACTGCCGTCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCCAATGCACCGAAGATCACTCCTCCATGTACTGAATGCGGGAAGAGATTTTGGTCGAATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCCGAACGTCAATGGCGGGGGATTATTCCGCCGATTAATTTCCGTCGTCCTATTTCGGTTTCTCCTAATTTTAGCCCTAATATCGCTACTGATTTGGTAGAATCTTCGTTTACTGAAGAAGATCAAGACATCGCTAATTGTTTGCTAATGCTTGCAAATGGCCCTAATTCGATTTCTAGGGTTTCTGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCACATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATGGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGGCATTGTAGCCATGAGAGGAGCAGTATCAATCTGGAGAATAAAATGTCGATGATGATTTTAGGAACAGCAGATCACAAGAGATTCCATTGGGAGAATAATGCAGCTACAGAAGAAGGTTTCATTGATTTGGATTTGAACATGCCTGCCCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGTCTCACTCTGGATCTCAGGTTGGGCCTTTGAAGATAAGCTTCTTTCATTCTTTTGTTAGGCTCTTTATTACAATTTGTTGATATGTTGTAATTTAGGCCATTCGTATGCGCTGTATCATTCATATCTCTGTCTCTGGTTTTAGGGGGAAGTGTGAATAGTATCCTCTGTTAGCTATACATTTTAGGTTGACATTTATGAATTTCTTATAC 1256 41.72 MNPHFNSVSIASSSSSPLDLTLPFELQMVETTKRRRPRKKRSRIETDDSTVVTAVVSSKAKYSKKPDPNAPKITPPCTECGKRFWSNKALFGHMRCHPERQWRGIIPPINFRRPISVSPNFSPNIATDLVESSFTEEDQDIANCLLMLANGPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMAKSDEETEDEITLFGHCSHERSSINLENKMSMMILGTADHKRFHWENNAATEEGFIDLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 52762107 52763362 - XM_039032986.1 Bhi05g01589 35799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01589 280 Gene3D Classic Zinc Finger 33 190 - -
Bhi05g01589 280 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 280 - -
Bhi05g01589 280 SUPERFAMILY beta-beta-alpha zinc fingers 76 185 IPR036236 -
Bhi05g01589 280 SMART c2h2final6 75 97 IPR013087 -
Bhi05g01589 280 SMART c2h2final6 163 185 IPR013087 -
Bhi05g01589 280 Pfam C2H2-type zinc finger 162 186 - -
Bhi05g01589 280 Pfam C2H2-type zinc finger 77 99 - -
Bhi05g01589 280 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Bhi05g01589 280 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 280 - -
Bhi05g01589 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Bhi05g01589 280 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Bhi05g01589 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g02049 Bhi-Chr2:55685932 Bhi05g01589 Bhi-Chr5:52762107 4.53E-27 dispersed
Bhi03g00771 Bhi-Chr3:14308817 Bhi05g01589 Bhi-Chr5:52762107 2.30E-09 dispersed
Bhi05g01589 Bhi-Chr5:52762107 Bhi11g02048 Bhi-Chr11:58378691 1.97E-10 dispersed
Bhi05g01589 Bhi-Chr5:52762107 Bhi10g00130 Bhi-Chr10:2881634 8.98E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1240 PF13912 zf-C2H2_6 6.80E-10 CL0361 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01589 - - csv:105436224 393.66