Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01612 TATTGACTTTTATATGAAAGCATCATAAAGAACAATAAATTTTTAGGGAAAAATTATTGAAATGATAGTTACAAACAGTTACATTGATATGTTTGTGATGTTTTAATATCTGTTCTAGTTGGGTCCTTGTCCTATCTTTTTTATGAAAATGATGGGCCACAGTGATGGTCAATACCTCAACAATAAACCTTCTGTAATTTTGGGAGTAAAGAAATTAGCATTAATAATAGATTATCTGTCAGATAAATCCATTTGATTATAAAGAAATTAGCATTAATAATCGTGTAGATAAGAAAAAGGTGGGAGGGAAGCATGCCATAAACATTGCTGAATTATTGGTTTCTGCAAATCAATTACTTAATTATAATAAGATGAGTTTGAGATTCCTCATGTCTCCCTCGGCCAAGATATATAAATAGGACCCGGAAGGCCAAAAGATGAAGTCAAATTGAAACTGCTCTGGCTATTTTGCAATCCATTAACTTAGGCTTTTTGCAAAATAAAATGGATTCCTTTGCTACAAACTCAAAGAAGTCATTCCATATCCGCTCAAACAGCTTGCCTTCAAAGCCACATCCAGTTGTTGCTGAAGTCAATGAACAGCTTTGCAGATTGCAGGCCTCTGAAGCCACTTCTTCATCTTCTACTTTGTGCCAAAAACTTGATGGCCTTAAAGATTTGCATGATTGCATTGATAAGTTGCTTCTTTTGCCCCTCACCCATCAAGCTCTTGTTGACAAAAAATCGGTTGATGACTTGCTAGAAGGATCTCTCAAGCTCTTGGACGTGTGTGCTTCGGCTAAGGATGTGTTATCCCAAATGAAGGAATGTGCTCACGAACTTGAGTTGGCTTTGCGCAGAAGAAGAGGAGATATTGTAGTTGATGTTCAAAAGTATTTAACCTCAAGGAAGATGTTGAAAAAGGTAATCCACAAGGCCTTGAAGGGAAGGGAAAAAACAAGTTCCCAAAAGAGTGATGAAAGTTCAGAAATTGTTAGCTTGTTAAAGGAGGCAGAAACTGTCACATATAACAGCATCGAATGCTTGTTGTTATTTGTAGCAGGGCCAAAGATGCCATCAAAGATGAGCAAATGGTCATTGGTTTCCAAGTTGATGCAACCTAAGAGAGTAGCCTGCAAAGATGATGGCACAGATGGAAATGAAGTGGAGATGGTGGATGTTGCATTAAGTTCAATCACCAATCACAAATTTGATTTCCTTGTGCAAGGTGAAGATGTCCAGAACTCGCTGAGCAAATTGAAGTTGTGTATTCATGACATCGAAGAAGGTCTTGAGAGTCTATATCGCCATCTTATAAAAAACAGAGTCTCACTTCTTAACATCCTAAATCACTAAGGATGAAATTTCAAAAAGTAGTATCATAGCCGATTCCAATGGAATCCATTTTTGTCAAATGTAAACACCACAGTACATATATATACAAATACATTTCATAACATCTTTGCAAAGCAAACCATCTTCTTCTCCAGCTAACTTTTTGCAATATTATTATTGTTGATATAGTTAAAAATGCAAACATAGTCCTATATGAAATAGAAGTGAGAAAGATCCTTATTATATAAGTTTGGATAATAAATATAATACTACGAGGTTTTTCAAGTTGAATCCAAAAAGTAAAATCATGGCTACATAGTCCAAAGTGAAGACTATAATCATGGTGATGTGACAAAAAAAAATCTATCCACCACCCAGCACATCATTATTTTTGTCTATTAACTATGTACACTTTCTTTGTTTTAACCATTAAGGATTGCGAACTATTGGATAAAAAAGAAATTGTGTTTCACTTCTAAAGTGATTTTCCCACTAAAGCTTAAACTATGGTATGTTAACTAGAGGTCCATTAGTTAACCAAGGTTACATAATGAAGCTAAGTATTGAAATTGGCAATGCTGTCAAGGATTCCAATTGCCTCCG 1938 35.19 MDSFATNSKKSFHIRSNSLPSKPHPVVAEVNEQLCRLQASEATSSSSTLCQKLDGLKDLHDCIDKLLLLPLTHQALVDKKSVDDLLEGSLKLLDVCASAKDVLSQMKECAHELELALRRRRGDIVVDVQKYLTSRKMLKKVIHKALKGREKTSSQKSDESSEIVSLLKEAETVTYNSIECLLLFVAGPKMPSKMSKWSLVSKLMQPKRVACKDDGTDGNEVEMVDVALSSITNHKFDFLVQGEDVQNSLSKLKLCIHDIEEGLESLYRHLIKNRVSLLNILNH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 53064192 53066129 + XM_039033051.1 Bhi05g01612 35822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01612 283 Pfam Protein BPS1 52 280 IPR004320 GO:0048364|GO:0048367
Bhi05g01612 283 PANTHER BPS1-LIKE PROTEIN 8 282 - -
Bhi05g01612 283 PANTHER DUF241 DOMAIN PROTEIN 8 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01612 - - - csv:116405105 456.832
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi05g01612 Bhi10g01228 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01607 Bhi-Chr5:53042908 Bhi05g01612 Bhi-Chr5:53064192 9.85E-92 dispersed
Bhi05g01612 Bhi-Chr5:53064192 Bhi05g01615 Bhi-Chr5:53096253 7.29E-159 dispersed
Bhi05g01611 Bhi-Chr5:53061784 Bhi05g01612 Bhi-Chr5:53064192 3.62E-111 tandem
Bhi05g01612 Bhi-Chr5:53064192 Bhi05g01613 Bhi-Chr5:53077080 1.08E-159 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g249 . . . . . . . . Cmo19g00804 . . . . . . . . Bhi05g01612 . . . . . . Cla02g00364 Cam02g0370 . . Clacu02g0364 Cmu02g0361 Cre02g0693 . . . . . Csa07g00167 . Cme01g01167 . . . . . . . . Sed01g0640 . . . Cma19g00789 . . . . Bhi10g01228 Tan05g1071 Cmetu11g0337 . Hepe08g0329 . . . . . . . . . Lsi11g01269 . Chy01g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217