Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01628 ATGGCTTGGTTTCTTAGCTTTCTCTTTCTCTTTTTCATCTCTTCTGCTAGTGCTTGTGATCGATGTGTTTTCCAATCTAAAGCTAGCCATCTTTACGAATCACCTACAACATATGGGGGAGCATGTGGTTATGGAAACTTGGCATTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACCGATCAAAATAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACTATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATACAAGAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTTGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATAAAATACTTCTACCAAGGTGGCCAAACAGACATGGTTGCTGTTGATATTGCTCAAGTTGGGACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAGTTGAGAATGGTGGTTACTTCTGGATACGATGGAAAATGGGTTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGGATGATCTATGATACTGGTGTTCAAATCAACGACATTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGGTGATGCACAATGGAAATAA 789 41.19 MAWFLSFLFLFFISSASACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVPCEYPNRNLFVRVEESSYNPFKLAIKYFYQGGQTDMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGMIYDTGVQINDIAKESCPPWQCGDAQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 53304318 53307060 - XM_039032860.1 Bhi05g01628 35838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01628 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Bhi05g01628 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Bhi05g01628 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Bhi05g01628 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Bhi05g01628 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Bhi05g01628 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Bhi05g01628 262 Gene3D - 140 244 IPR036749 -
Bhi05g01628 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Bhi05g01628 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Bhi05g01628 262 PANTHER EXPANSIN-LIKE A1-RELATED 5 257 - -
Bhi05g01628 262 PANTHER EXPANSIN-B3 5 257 - -
Bhi05g01628 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Bhi05g01628 262 SUPERFAMILY Barwin-like endoglucanases 10 142 IPR036908 -
Bhi05g01628 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Bhi05g01628 262 Gene3D - 13 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01628 Bhi-Chr5:53304318 Bhi05g01630 Bhi-Chr5:53407298 4.90E-162 dispersed
Bhi05g01627 Bhi-Chr5:53293447 Bhi05g01628 Bhi-Chr5:53304318 1.58E-168 tandem
Bhi05g01628 Bhi-Chr5:53304318 Bhi05g01629 Bhi-Chr5:53379624 2.81E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01628 - - csv:101209628 523.857