Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01668 GCCCAACAACTATTCTCTCTCCCACCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCGAACCCATTCTTTCTCTTCGTCGATCGCCATTTTTTCTCTGGAAGCACTAACCAGTAATGGATACGCTTAAGAAATCCTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAGATTTCTGCTGGCGGAGCCGGCAGCGAAATCAATCACGAGGAGCTCCCCATTCTTCTCAATCACGAACCTGCGGATCATCGTCGTCGTCTTAGGGATCGTCACCCGGTGAATGATTCTGATTCATCTGACGGAACAGAGGTCATTCTCAAGATCGATGATGGCGGTTCTTCCACTGTCTCCAGATCTCTGGACTCTGTCGGCAGTAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGGTTTTTGGAATAATAATGCAATTGGAATTGGGGAAAGCGCGAGTAGGGTTAGTGGTGCGAGAATGAGTGATAGTGGTGTGGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGAATGGAGGATCCTCCGACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTAGGGGGGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGTTGAAGCCTGATAGGAGTATGACTCCATTGCCGGAATCGCCGTTGAATCAAACATCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGGTAAGAAGGCGGTGTAGAGATTCGCGCGATTTGCCAGAAGAGTTTAAAGGAGGACAACCGCCATGGCAGCAATCGCACCATGAACGTCTTGGGTCTCCGACTATTTCTGGGGTTCAGAATGAGTCTTCTGCTGAGGCTATGAGGTCCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTAATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACTCGCCTGCAGAACCAGACCGGCTCTCTGGCCTCATTCCTAAATCAGGACAGCTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGACGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGATTTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGATCAGTTTGATTCTAATCACTGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTAGATATATGGAAATGGGAGGTGATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAAGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAAGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAAACAAACCAACGCTAGTATACTCAATTATGTAAGGAGGGTTTTAGTGTGTCTATTGATAAGCACATTCCTATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTCATTGAGACTCTCTCAGGGCCACCTCTGATTGAAATACTAAAGAATGAGGAAGAAGAGGAGAGGGTTGCTGATGAAGTCCAAAAATTACAGAATGCAGGAATTAACATACCCTCTGATCTCAAGGCAGCAACCTTCTCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGCACCCACAAAAGTTTTTGTGCAAAAAGTTCCAAACTCTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACAATCGACCACTTGCACAAACTAAGTCCCAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACAGGGGCCAGGTCGTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCCAAGAAGATTTTTCAGAATGTGGCTCGGCGTGGATATAAGTACATATACTTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTTAAAACGATGAGTCTCTTTGAAGGAGCAGCTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCAGCATCCTCATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCCTTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACTATATTTGAAGCAATCATCTTTTTATTTGTCATGCATCCATTTGACGTTGGAGATCGATGCGAAATCGATGGAACGCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTACCGTAGTCCGGAGATGGGTGAATCAGTTGAGTTCTATGTCCATATCGCTACACCGGCTGAGAAAATTACGGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGGTTGTGTTCATGGATATAGATGATTTAAATAAGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACGCAGGTGAAAGATGGGCTCGAAGGTCCGTCTTGGTCGAAGAAGTCGTGAAAGTCTGTCAAGAGCTCGACATTCAATATCGTCTATTGCCCATCGATATCAATATCCGTTCACTACCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAATTGGACTTCCTCTGCAAGTTGAACAGCAAGCAACACACAAGGCTTCACTTTCATCTTCTCTCTCAGTTAAGGCTTTTCCTGTTATATCATCTCCATTATAGAGATTCACCGATCATCATTCCAACGGGACGACAAAGAACTAAATACTCTATGAATCACCGAATAGATAGGTAGACATGTTTCGTTACATTGATCAAGAATGTTCACAGCGACCGAGAAAGGCGAAGGTTGAGAAATGAGGAAGTGATTTACATATTAGCAAGAGTTTGAGTTTGAGATACATCACAATAAGTGAGGTCTTGGGTATTTTGTTTATACATGAAGATGTTCTGAGTTTAATTAGTATAGACACTTTCCCTTTTGTACTTTGTTTGGTCTGATGTGGTTAGGATAGGAACTTGGGTATTAGATCAGTTCCTCCATCCATGTCAATTTGTAGATTGCTTGCAACAAAGCACTCATGAACTGTATGTGTGTCCTTTGCATATATGTAAATGTATTGAAAGGATAATAGAATACAATTACTATAGAAATATCTTGTAATAGTGAATCAATTGCATCATGGAAGTTCAA 3546 41.77 MDTLKKSFKGNVSFKHTRKISAGGAGSEINHEELPILLNHEPADHRRRLRDRHPVNDSDSSDGTEVILKIDDGGSSTVSRSLDSVGSNGGKVWRESRYGFWNNNAIGIGESASRVSGARMSDSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIRGETTLDMDLEMEELKPDRSMTPLPESPLNQTSKDLKVSFQQDSTEISSNDQSVRRRCRDSRDLPEEFKGGQPPWQQSHHERLGSPTISGVQNESSAEAMRSASNLSFHSELSFQRKSNLLRAKTKSRLIDSPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDDFKRGNFNALTVLQWISLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIKIVVFFIERNFLLRKKVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNASILNYVRRVLVCLLISTFLWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEILKNEEEEERVADEVQKLQNAGINIPSDLKAATFSSVKSGRVIGSGRTHKSFCAKSSKLSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIQGPGRDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVFKTMSLFEGAAENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFSILILILWLIVLGIASSKFFVFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMVVEEMNILTTVFLRYDNLKIIIPNSVLATKLIHNFYRSPEMGESVEFYVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMVVFMDIDDLNKLKLAVWLSHRMNHQDAGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSSAS 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54737602 54742716 + XM_039031650.1 Bhi05g01668 35878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01668 959 PIRSF Memb_At2g17000 52 959 IPR016688 -
Bhi05g01668 959 SUPERFAMILY Sm-like ribonucleoproteins 772 831 IPR010920 -
Bhi05g01668 959 Coils Coil 513 536 - -
Bhi05g01668 959 MobiDBLite consensus disorder prediction 45 65 - -
Bhi05g01668 959 Pfam Mechanosensitive ion channel 724 928 IPR006685 GO:0016020|GO:0055085
Bhi05g01668 959 MobiDBLite consensus disorder prediction 45 59 - -
Bhi05g01668 959 MobiDBLite consensus disorder prediction 207 224 - -
Bhi05g01668 959 MobiDBLite consensus disorder prediction 196 259 - -
Bhi05g01668 959 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 110 943 - -
Bhi05g01668 959 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 120 - -
Bhi05g01668 959 MobiDBLite consensus disorder prediction 235 259 - -
Bhi05g01668 959 Gene3D - 782 831 IPR023408 -
Bhi05g01668 959 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 120 IPR016688 -
Bhi05g01668 959 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 110 943 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01668 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101207426 1656.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01668 Bhi-Chr5:54737602 Bhi10g01195 Bhi-Chr10:26206649 0 dispersed
Bhi05g01668 Bhi-Chr5:54737602 Bhi05g01669 Bhi-Chr5:54737602 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67