Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01672 TAAGATCACTTTCCATTATTTTTCTACATGTCATTTTTTATTTGGGACAACAAGACGACGACGACGACAACACCGCAAGCCTCCTGTCTCGACTTGTCTCGTCGGCGCTTCTTAGCTGAATGCTTCATCAGAAAAATTCTGATCTCTTCCTCTTCTTTGATCGAACCACAGGTAGCAATAGAACGGATCGACATTTTCTTTCTTCTCCAAATGCCAAATAAACGATCTACTGGTTCATTCCATGCCCAATTTGGTGATGATTCGCCGGAGTATTTGGTCTACGAAGACCTTTCGTGCAGCTGCTTTAACAATCTTCAATCCTCAGCAGCATCTTCATCGTCGTCCAGTTATATTCAACATTGCTTGTCAGTTGAACCAGACTTGTTTCTCTTTTTCTGCGAGAGCCAACAGTTTTCAGGTTCCGGAATTCTATTTTCTGAACAAGAAGATCTCTTATTTGATACGAACAGGCCGAATAAGTGAAGCGAGGGAACTTTTTGATAGCATTAAGCATCGAAATACGATCACTTGGAACACGATGATCACTGGGTATGTGAAAAGGAGAGAGATGTTGAAAGCACTCCAGCTGTTCGACGAAATGCCTAACAGAGACATTGTGTCATGGAACTTAATGTTATCAGGCTATATATCTTGTGGCGGAAAGTTCATTGAGAGGGCACGGAATATGTTCGATAAAATGCCCGAAAGAGATTGTGTTTCATGGAACACGATGTTGAGTGGTTATGCTAAGAATAGGATGATGGATAAAGCAGAAGAGATTTTCAATTACATGCCAGAGCGCAATGTTGTCACATGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTATGTGAAGAAAGCTGTTGAGTTCTTTAAGATGATGCCAGAACGAGATTCTGCTTCTCTTAGTGTACTGGTTTCTGGTCTGATTCAGAATGATAAGTTGGTTGAAGCTGAAAAGATTCTGCTTCAATATGGTGGGAATGATGGTAAAGGGGATTTAGTTCATGCTTATAATACTTTGATTGCTGGATATGGTCAGAAAGGAATGACCCACGAAGCCCGTAAACTGTTTGATCGCATCCCTTCGGGTCGTGATCATGAGGAAGATGAATGTGGCAACTTTAGGAGGAATGTGGTTTCATGGAACTCTATGATAATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAATTATTCGATAGAATGGTTGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTATGTCCAGATCTTGGATATGAAAGAGGCCTCGAATCTTTTCGGTAGAATGCTGGAGCCCGATACCCTTTCTTGGAATATGATGATATCTGGGTTTGCTGAGATCGGTAATTTGAAACTAGCTCATGACTTGTTCATGAGGATGCCAGAGAAAAGCCTGGTCTCATGGAATTCCATGATATCTGGCTGTGAGAAAAATGAAGATTATAAAGGAGCAATTAACATCTTTTTGCAGATGCAACATGAAGGTAAAAAACCAGATAGGCACACTTTATCATCAATTCTAAGTGCTTGTGCCGGGTTGGTAGATTTGGCTTTGGGAACTCAGATCCATCAACTAGTTATAAAAGCCTTTATTGCAGATTTACCCATAAACAACTCTCTTGTTACAATGTATTCAAGATGTGGAGCAATCGTTGAGGCACGGACTGTCTTTTATGAAATGAATCTGCAGAGAGATGTCATTTCTTGGAATGCGATGATTGGCGGGTATGCCTCTCATGGCTTTGCAGCAGAGGCTCTTAAACTTTTTGAATTGATGAAACAATGTAATGTGCAGCCCACTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATCGAGGAAGGTAGGAGAGAATTCAACTCCATGGTTAACACACACAGTATTGAGCCACGAGTTGAACACTATGCTGCCCTCGTTGACATCATCAGTCGACATGGGCAACTTGAAGAAGCAATGAGTTTGATCAATAGCATGCCATGTGAACCGGACAAAACAGTGTGGGGTGCATTACTGGGTGCTTGTAGAGTGCACAACAATGTTGAGATGGCTCAAGCAGCAGCGGAAGAGTTAATGAAGCTCGAACCCGAAAGCTCAACTCCATATGTGCTGCTATATAATATGTATGCCGACGTGGGACGATGGGATGATGCTGCTGAAGTGAGAACGATGATGGAGAAGAGCAATGTTCAAAAGGAAGTTGGATATAGTCGGGTGGATTCTTATTGCTAAAGATATTTGATTGGCTTCCAATGCTTTGGGTGAGTAGTAGATTGATTCTGTCCTTAGTTTCATAACTTATAAAATACAACCATCTTCATTGGATGGATCTTTTGAACCCTTTTGAGAATAATTTTTAAGTTTTTTAAAAAATTGATATATATATAAATCTAGTCGATGTCTTATTTATAAAGCTA 2454 40.59 MPNLVMIRRSIWSTKTFRAAALTIFNPQQHLHRRPVIFNIACQLNQTCFSFSARANSFQVPEFYFLNKKISYLIRTGRISEARELFDSIKHRNTITWNTMITGYVKRREMLKALQLFDEMPNRDIVSWNLMLSGYISCGGKFIERARNMFDKMPERDCVSWNTMLSGYAKNRMMDKAEEIFNYMPERNVVTWNAMVSGYLMNGYVKKAVEFFKMMPERDSASLSVLVSGLIQNDKLVEAEKILLQYGGNDGKGDLVHAYNTLIAGYGQKGMTHEARKLFDRIPSGRDHEEDECGNFRRNVVSWNSMIMSYVRAGDIVSARELFDRMVERDTFSWNTMISGYVQILDMKEASNLFGRMLEPDTLSWNMMISGFAEIGNLKLAHDLFMRMPEKSLVSWNSMISGCEKNEDYKGAINIFLQMQHEGKKPDRHTLSSILSACAGLVDLALGTQIHQLVIKAFIADLPINNSLVTMYSRCGAIVEARTVFYEMNLQRDVISWNAMIGGYASHGFAAEALKLFELMKQCNVQPTYITFISVLNACAHAGLIEEGRREFNSMVNTHSIEPRVEHYAALVDIISRHGQLEEAMSLINSMPCEPDKTVWGALLGACRVHNNVEMAQAAAEELMKLEPESSTPYVLLYNMYADVGRWDDAAEVRTMMEKSNVQKEVGYSRVDSYC 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54840366 54842819 + XM_039031018.1 Bhi05g01672 35882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 391 IPR002885 -
Bhi05g01672 675 PANTHER OS06G0228900 PROTEIN 63 672 - -
Bhi05g01672 675 Gene3D Tetratricopeptide repeat domain 359 456 IPR011990 GO:0005515
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 364 393 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 301 330 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 332 359 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 258 282 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 95 126 IPR002885 -
Bhi05g01672 675 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 159 189 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 301 329 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 568 592 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 364 391 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 190 218 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 332 359 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 126 158 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 466 488 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat 258 282 IPR002885 -
Bhi05g01672 675 Pfam E motif 610 671 IPR046848 -
Bhi05g01672 675 Pfam PPR repeat family 92 124 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat family 392 439 IPR002885 -
Bhi05g01672 675 Pfam PPR repeat family 492 540 IPR002885 -
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Bhi05g01672 675 PANTHER OS07G0578800 PROTEIN-RELATED 63 672 IPR045215 GO:0003723|GO:0009451
Bhi05g01672 675 Gene3D Tetratricopeptide repeat domain 185 248 IPR011990 GO:0005515
Bhi05g01672 675 Gene3D Tetratricopeptide repeat domain 463 672 IPR011990 GO:0005515
Bhi05g01672 675 Gene3D Tetratricopeptide repeat domain 256 358 IPR011990 GO:0005515
Bhi05g01672 675 Gene3D Tetratricopeptide repeat domain 53 184 IPR011990 GO:0005515
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Bhi05g01672 675 SUPERFAMILY TPR-like 290 650 IPR011990 GO:0005515
Bhi05g01672 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01672 - - - bhj:120077123 1365.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01672 Bhi-Chr5:54840366 Bhi02g00128 Bhi-Chr2:2421770 6.45E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19