Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01690 AAAACTTCAAAATAATCCAACCCGCAATCTTTGCGATCTGAGATCCTGAGCTGAACATTGACTACTCCCGGCAAAAAGGCAGTCCTTGGGCTTGATGGGCCTTCCACAATCAGACGTTCGACCGTAAATCAGAACCCAAATTCTTCACCATAGCGTATCCTAGAAAGAAACTGTGACCCAGCGAGCGGAAGCACCAGCAACAATCCAGTTTATCCTCGTTCTGCGGGTTTTTGGCGCTTTTACCAATCCCCCTGGAGGCTGCAGCTGGTGAGCAGAGCTCAAATTTCTTCGCGCTGTGGAGCTTTTCGCAGTTTAGTAGACTCAGTTTAGCTGCTGGATGTTGCATTGCTCGCTTTAGACACTGTAGTTATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGACATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGACAGTAAAGATGACGGGGAACATAGGTCAAAACGTTCAAAATCAGAAGATGAGTCACGTGATCAAGATCGACATAGGGATAGGCATCGGTCTAGGTTCGGAGAGAGAGACCGTGATAGGCATAGAAGCAGTAAGGAAAATAGGGGAAAAGAGGACAGAGAAGGGAATCATGAAGAGAGAAGCAGTAGAGACAGGGATGTGGACAGAGATAAAGAACGTTCTCACGATCGTGATAGACGAGGTAGAGATGGCGAAAGGAACAGGGAAAGAGAACGATCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGTAGTGATCGGGATGAAGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAGAGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGATAAAAAGGAAGAAGCAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGACGTTCTAAAGGCGTCGGGTTGACAACTAGTTCCTCTTTGCACCCGAAGGAGTTCTCAATCAAGAAGGACGTGAACTTGGTAAAGGATAAGGTGGAGTTAGATTCACCACGGGGAGAGAAAGTGGACGGCCGTCAGTCTTTAAAGGACTCCAAGAAGCATTCTCGTCTGCTGAAGCCATTCCCTGAACATTTTATTAGAAAAAAGACATCCTTCTTCAACTCTTGGACAACATTAGCCAACTCAGATTTGCTCGAGGAATGTTGTGTCAAGGTTCAAATCCCTGATTTTTTCCCCAATAGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCAGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTGCTGCTGCTGGTGGACCGGGTGGAGTAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTACACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGCCATTGCAAAGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACAATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATATTGGAGCAAATACAGGAGACCTTGATGATGAGGATGGCGGTGGCCTGTCCTTAAATGCTAGTTCTCGAGCATCTCTGATGCAGAAGCTGGACCGTACTCGTGCGGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTGCTATGCCGATGGCACCTATCCTTGGAGGTGCAACTATCCCTTCCCTTGCTGTCGGTACTTCTTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCATGTTCCCGCTGTTGCTGCCAGTTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTGTTGAAGAATATGTTTGATCCTACAGCTGAGTCGGAACCAACTTTCGATCTAGATATCAGAGACGATGTTGAAGAGGAGTGCTCTAGGTTCGGAAAATTGAAACATATATATGTTGACAAGAATAGCGCTGGTTTTGTATATTTGAGATTTGAAAAATCAGAGTCTGCAATGGAAGCCCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATCCCGAGCTATGAAGTGAAATTTCCAGACAGCAGATAGTACTAGTCCAAGTTTAGTTTGAATGCTCTACTCCGAAATGGTTACCGGCCTGTTGGTGCATTTGATTACAAAAGTGGCTAAGGTGCTAAGATCAGAAGATGATTTGTATGTCTTTGAAAGGTACACAATTTACGATTTACTAGCACGATGGCCTTGCGAATGAAGACGGTGAAAAGAAATTGCATAGCTCAATATAGAATACATTGTTCAATATGAATACTGAAAAGTTGATTGTAATGTAACTGACATATGGTTCTTTTGTATGTTCTATTAGTGACTTGACCTAGGAAATTCAGTGCCGATTCGTCGACCCAGTCGATTTATATCTAAAGATATGAGATTTGCAATGTTGGCTGTTCATGTTATGGATATTATTTTATGCCTTAGTTTTAACTGATTTGGGAACATATGAAATTTCAAA 2845 44.04 MDFDEYDYLEKTVENPEGQKVKETANGGDADMKSGDKHRSRSSKYKSDSKDDGEHRSKRSKSEDESRDQDRHRDRHRSRFGERDRDRHRSSKENRGKEDREGNHEERSSRDRDVDRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDEGIRERSRDNELRERERERESRERGRDGRRYKDKKEEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGLTTSSSLHPKEFSIKKDVNLVKDKVELDSPRGEKVDGRQSLKDSKKHSRLLKPFPEHFIRKKTSFFNSWTTLANSDLLEECCVKVQIPDFFPNRYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTAAAGGPGGVMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDIGANTGDLDDEDGGGLSLNASSRASLMQKLDRTRAASSIAGSLGTHVVNNTGAAMPMAPILGGATIPSLAVGTSLAAFPAFPGLGAGVHVPAVAASLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEVKFPDSR 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55167755 55189220 + XM_039031586.1 Bhi05g01690 35900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01690 684 SUPERFAMILY RNA-binding domain, RBD 196 249 IPR035979 GO:0003676
Bhi05g01690 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 249 IPR000504 GO:0003723
Bhi05g01690 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 614 665 IPR000504 GO:0003723
Bhi05g01690 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 473 IPR000504 GO:0003723
Bhi05g01690 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 402 479 IPR000504 GO:0003723
Bhi05g01690 684 SMART rrm1_1 206 372 IPR000504 GO:0003723
Bhi05g01690 684 SMART rrm1_1 591 669 IPR000504 GO:0003723
Bhi05g01690 684 SMART rrm1_1 403 475 IPR000504 GO:0003723
Bhi05g01690 684 TIGRFAM SF-CC1: splicing factor, CC1-like family 344 681 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bhi05g01690 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 590 673 IPR000504 GO:0003723
Bhi05g01690 684 SUPERFAMILY RNA-binding domain, RBD 402 670 IPR035979 GO:0003676
Bhi05g01690 684 CDD RRM3_RBM39_like 589 672 - -
Bhi05g01690 684 Gene3D - 382 482 IPR012677 -
Bhi05g01690 684 Gene3D - 198 381 IPR012677 -
Bhi05g01690 684 MobiDBLite consensus disorder prediction 1 203 - -
Bhi05g01690 684 SMART rrm2_1 591 669 IPR003954 GO:0003676
Bhi05g01690 684 SMART rrm2_1 403 475 IPR003954 GO:0003676
Bhi05g01690 684 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 343 680 - -
Bhi05g01690 684 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 249 - -
Bhi05g01690 684 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 493 608 IPR029123 -
Bhi05g01690 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 288 IPR000504 GO:0003723
Bhi05g01690 684 Gene3D - 586 684 IPR012677 -
Bhi05g01690 684 PANTHER CC1-LIKE SPLICING FACTOR 1 249 - -
Bhi05g01690 684 PANTHER CC1-LIKE SPLICING FACTOR 343 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01690 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02076 Bhi-Chr4:55851952 Bhi05g01690 Bhi-Chr5:55167755 1.87E-13 dispersed
Bhi05g01690 Bhi-Chr5:55167755 Bhi01g02533 Bhi-Chr1:62893224 6.18E-11 dispersed
Bhi05g01690 Bhi-Chr5:55167755 Bhi05g01691 Bhi-Chr5:55167759 3.10E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g184 . . . . . . . . Cmo19g00761 . . . . . . . Cpe15g00604 Bhi05g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00295 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01213 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65