Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01691 CTTCAAAATAATCCAACCCGCAATCTTTGCGATCTGAGATCCTGAGCTGAACATTGACTACTCCCGGCAAAAAGGCAGTCCTTGGGCTTGATGGGCCTTCCACAATCAGACGTTCGACCGTAAATCAGAACCCAAATTCTTCACCATAGCGTATCCTAGAAAGAAACTGTGACCCAGCGAGCGGAAGCACCAGCAACAATCCAGTTTATCCTCGTTCTGCGGGTTTTTGGCGCTTTTACCAATCCCCCTGGAGGCTGCAGCTGGTGAGCAGAGCTCAAATTTCTTCGCGCTGTGGAGCTTTTCGCAGTTTAGTAGACTCAGTTTAGCTGCTGGATGTTGCATTGCTCGCTTTAGACACTGTAGTTATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGACATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGACAGTAAAGATGACGGGGAACATAGGTCAAAACGTTCAAAATCAGAAGATGAGTCACGTGATCAAGATCGACATAGGGATAGGCATCGGTCTAGGTTCGGAGAGAGAGACCGTGATAGGCATAGAAGCAGTAAGGAAAATAGGGGAAAAGAGGACAGAGAAGGGAATCATGAAGAGAGAAGCAGTAGAGACAGGGATGTGGACAGAGATAAAGAACGTTCTCACGATCGTGATAGACGAGGTAGAGATGGCGAAAGGAACAGGGAAAGAGAACGATCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGTAGTGATCGGGATGAAGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAGAGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGAAGATATAAAGATAAAAAGGAAGAAGCAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCACGACGTTCTAAAGGCGTCGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCAGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTGCTGCTGCTGGTGGACCGGGTGGAGTAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTACACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGCCATTGCAAAGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACAATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATATTGGAGCAAATACAGGAGACCTTGATGATGAGGATGGCGGTGGCCTGTCCTTAAATGCTAGTTCTCGAGCATCTCTGATGCAGAAGCTGGACCGTACTCGTGCGGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTGCTATGCCGATGGCACCTATCCTTGGAGGTGCAACTATCCCTTCCCTTGCTGTCGGTACTTCTTTGGCCGCCTTTCCTGCTTTTCCTGGACTTGGTGCAGGCGTTCATGTTCCCGCTGTTGCTGCCAGTTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTGTTGAAGAATATGTTTGATCCTACAGCTGAGTCGGAACCAACTTTCGATCTAGATATCAGAGACGATGTTGAAGAGGAGTGCTCTAGGTTCGGAAAATTGAAACATATATATGTTGACAAGAATAGCGCTGGTTTTGTATATTTGAGATTTGAAAAATCAGAGTCTGCAATGGAAGCCCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATCCCGAGCTATGAAGTGAAATTTCCAGACAGCAGATAGTACTAGTCCAAGTTTAGTTTGAATGCTCTACTCCGAAATGGTTACCGGCCTGTTGGTGCATTTGATTACAAAAGTGGCTAAGGTGCTAAGATCAGAAGATGATTTGTATGTCTTTGAAAGGTACACAATTTACGATTTACTAGCACGATGGCCTTGCGAATGAAGACGGTGAAAAGAAATTGCATAGCTCAATATAGAATACATTGTTCAATATGAATACTGAAAAGTTGATTGTAATGTAACTGACATATGGTTCTTTTGTATGTTCTATTAGTGACTTGACCTAGGAAATTCAGTGCCGATTCGTCGACCCAGTCGATTTATATCTAAAGATATGAGATTTGCAATGTTGGCTGTTCATGTTATGGATATTATTTTATGCCTTAGTTTTAACTGATTTGGGAACATATGAAATTTCAAA 2559 44.16 MDFDEYDYLEKTVENPEGQKVKETANGGDADMKSGDKHRSRSSKYKSDSKDDGEHRSKRSKSEDESRDQDRHRDRHRSRFGERDRDRHRSSKENRGKEDREGNHEERSSRDRDVDRDKERSHDRDRRGRDGERNRERERSRRSRSRSERHRSDRDEGIRERSRDNELRERERERESRERGRDGRRYKDKKEEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTAAAGGPGGVMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDIGANTGDLDDEDGGGLSLNASSRASLMQKLDRTRAASSIAGSLGTHVVNNTGAAMPMAPILGGATIPSLAVGTSLAAFPAFPGLGAGVHVPAVAASLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKSESAMEAQRALNGRWFAGKMIGATFMDIPSYEVKFPDSR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55167759 55189220 + XM_039031587.1 Bhi05g01691 35901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01691 590 CDD RRM1_RBM39_like 206 278 - -
Bhi05g01691 590 SUPERFAMILY RNA-binding domain, RBD 198 306 IPR035979 GO:0003676
Bhi05g01691 590 MobiDBLite consensus disorder prediction 1 202 - -
Bhi05g01691 590 PANTHER CC1-LIKE SPLICING FACTOR 1 586 - -
Bhi05g01691 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 571 IPR000504 GO:0003723
Bhi05g01691 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 273 IPR000504 GO:0003723
Bhi05g01691 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 379 IPR000504 GO:0003723
Bhi05g01691 590 Gene3D - 492 590 IPR012677 -
Bhi05g01691 590 Gene3D - 291 388 IPR012677 -
Bhi05g01691 590 Gene3D - 143 290 IPR012677 -
Bhi05g01691 590 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 399 514 IPR029123 -
Bhi05g01691 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 579 IPR000504 GO:0003723
Bhi05g01691 590 CDD RRM3_RBM39_like 495 578 - -
Bhi05g01691 590 SMART rrm1_1 309 381 IPR000504 GO:0003723
Bhi05g01691 590 SMART rrm1_1 206 278 IPR000504 GO:0003723
Bhi05g01691 590 SMART rrm1_1 497 575 IPR000504 GO:0003723
Bhi05g01691 590 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 586 - -
Bhi05g01691 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Bhi05g01691 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 385 IPR000504 GO:0003723
Bhi05g01691 590 SMART rrm2_1 309 381 IPR003954 GO:0003676
Bhi05g01691 590 SMART rrm2_1 497 575 IPR003954 GO:0003676
Bhi05g01691 590 TIGRFAM SF-CC1: splicing factor, CC1-like family 82 587 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bhi05g01691 590 SUPERFAMILY RNA-binding domain, RBD 308 576 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01691 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00199 Bhi-Chr1:3976639 Bhi05g01691 Bhi-Chr5:55167759 8.91E-09 dispersed
Bhi01g00200 Bhi-Chr1:3976639 Bhi05g01691 Bhi-Chr5:55167759 8.91E-09 dispersed
Bhi03g01407 Bhi-Chr3:29456341 Bhi05g01691 Bhi-Chr5:55167759 1.41E-156 dispersed
Bhi03g01408 Bhi-Chr3:29456773 Bhi05g01691 Bhi-Chr5:55167759 3.70E-122 dispersed
Bhi05g01691 Bhi-Chr5:55167759 Bhi08g01842 Bhi-Chr8:53535624 9.70E-15 dispersed
Bhi11g01322 Bhi-Chr11:39034214 Bhi05g01691 Bhi-Chr5:55167759 2.27E-06 dispersed
Bhi11g01323 Bhi-Chr11:39034214 Bhi05g01691 Bhi-Chr5:55167759 2.29E-06 dispersed
Bhi05g01690 Bhi-Chr5:55167755 Bhi05g01691 Bhi-Chr5:55167759 3.10E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65