Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01772 TCTTTCAGGCCATCCACGCCATTTTTCCATGGTCCAAGTCCAACTTCTTGAAGCCCTTTGACGTAACTTTCCACTTTCAGTTGCTCGTTCGCATTCGCCCTAGCACACTCCCCCACCAATGGAAGACTCGGTTACGGCGGAGCTCCTCGACGACACGGCGGTTTCCGAGGAGCCGGTTTCTCACTCGGCCGACAACGGAACTCAGTTGACGCCTCAACAACTGGTGGCCAAGGCCATAGCTCCTGTTAAGCGGGAGTTTCTTCGCCCTCCGCCAGTGAGGTCATCATCCTCTAACAACGTGAAGGATGCCACTTCCACCGCTAAGAGTGACAGTGATGATAAACCTGCTCCGTCCGGCTTGGTGAAGGAGAAGAAGTCCAAACGTCAATTGAAACGAGAACGACGTCAGGAACAGAAGTCCACTCGCCACTTGTGTCCTGAAATAGCGAAGACTGGAGATGTTAGTTCATGTCGGTATAGTGATAAATGCCGCTTTAGTCATGATATTGAAGCCTTTAAATCTCAGAAACCTGCTGATCTCGATGGAGAGTGTCCCTTCAGTGGTGCTGAACAACTTTGCCCCTACGGTTTAGCGTGTAGATTTGCAGGGACCCATAAGGAAGGTGTTCCTGCTGGTTCTTCAGTTACTTTGAAGAAATGCTCTGAAATGAATGGATTGAATAAAGATGTTCAAAAGCTCTTATGGAAAAACAAGATGAAATTTCCCAAAGCTGATTCCAAACTCAAAGAACTTGGGCTCTTGGCTCAGGGAAAGTCAAAACTGAGGGTCAAAGAAGATAAGGAAAATGCTGTATCAAATGACATTGTGGTTGCAGACAGAACATGCTGCAGCAAAGTGAACAACGACTTGGATGCTGACTTAGAGATCTCTGTGAAAGTGCCAGAAGAAAATGAGCAGGAAGAAGGAACATTTTCATCTGATGAATCTCGACCCCTGAAGAAATCAAAATCTTTGTCTTCAGAGAATTTCCATTCTGATCAAGTTGACAATGGGGCACGTATGATCGATGAAACCATTGGTGAGGGCCATACACCAATCGAGTCTGAAGTTATGAATGACAGTGTACTTCTTGATAGTGATGCAAGTCTAAAACCACATCCCCGTGAAAAAAAGCTTATTGATTTTAGAGATAAGCTGTATCTTGCCCCTCTGACCACTGTTGGGAATCTTCCCTTTAGAAGAGTTTGCAAAGTTTTAGGAGCAGATGTGACATGCGGTGAAATGGCAATGTGTACCAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGTTGAGACGACATTCCTCAGAAGATCTATTTGGTGTACAGATATGCGGTGCATATCCGGACACAGTTTCACGTGCTGTGGAACTTATAAACAAAGAATGTGTGCTTGACTTCATCGACATAAACATGGGATGCCCAATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTCACAAAGCCAATGCGCATGAAAAGTGTAGTAGAAGCAGCTTCGGGAATTGTGGATACACCCATTACAATTAAGGTTCGGACAGGCTACTTTGAAGGGAAAAACCGTATCGATTCACTTATTGCAGATATTGGTAACTGGGGAGCCAGTGCTGTAACCATTCATGGCCGGACTCGTCAGCAACGATACAGCAAGCTTGCTGACTGGGAATACATAAATCGTTGTTCCTCGTTGGCTCCTGAATCTCTGCAAGTTATAGGAAACGGGGACGTATTTTCATATTCAGACTGGAATCGACATAGGGACGAAGGTCCAAAGTTAGCCACATGCATGATTGCTAGAGGAGCACTGATTAAGATATATTGATAAAATATTGGGGGAAGCTCATGTAAATCATAAAAATTATTTAAATTGGTAATAGATCTTA 1895 44.49 MEDSVTAELLDDTAVSEEPVSHSADNGTQLTPQQLVAKAIAPVKREFLRPPPVRSSSSNNVKDATSTAKSDSDDKPAPSGLVKEKKSKRQLKRERRQEQKSTRHLCPEIAKTGDVSSCRYSDKCRFSHDIEAFKSQKPADLDGECPFSGAEQLCPYGLACRFAGTHKEGVPAGSSVTLKKCSEMNGLNKDVQKLLWKNKMKFPKADSKLKELGLLAQGKSKLRVKEDKENAVSNDIVVADRTCCSKVNNDLDADLEISVKVPEENEQEEGTFSSDESRPLKKSKSLSSENFHSDQVDNGARMIDETIGEGHTPIESEVMNDSVLLDSDASLKPHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVSRAVELINKECVLDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEAASGIVDTPITIKVRTGYFEGKNRIDSLIADIGNWGASAVTIHGRTRQQRYSKLADWEYINRCSSLAPESLQVIGNGDVFSYSDWNRHRDEGPKLATCMIARGALIKIY 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56528248 56532280 - XM_039032736.1 Bhi05g01772 35982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01772 571 MobiDBLite consensus disorder prediction 260 300 - -
Bhi05g01772 571 Coils Coil 81 101 - -
Bhi05g01772 571 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 37 569 - -
Bhi05g01772 571 Pfam CCCH-type zinc finger 104 129 IPR041367 -
Bhi05g01772 571 Pfam Dihydrouridine synthase (Dus) 349 567 IPR035587 -
Bhi05g01772 571 MobiDBLite consensus disorder prediction 19 35 - -
Bhi05g01772 571 CDD DUS_like_FMN 346 569 IPR035587 -
Bhi05g01772 571 Gene3D Aldolase class I 342 571 IPR013785 -
Bhi05g01772 571 ProSiteProfiles Zinc finger C3H1-type profile. 100 131 IPR000571 GO:0046872
Bhi05g01772 571 SUPERFAMILY FMN-linked oxidoreductases 346 569 - -
Bhi05g01772 571 MobiDBLite consensus disorder prediction 52 66 - -
Bhi05g01772 571 ProSitePatterns Uncharacterized protein family UPF0034 signature. 430 448 IPR018517 GO:0008033|GO:0017150|GO:0050660
Bhi05g01772 571 MobiDBLite consensus disorder prediction 1 105 - -
Bhi05g01772 571 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 37 569 - -
Bhi05g01772 571 MobiDBLite consensus disorder prediction 260 288 - -
Bhi05g01772 571 Gene3D - 95 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01772 K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89] - csv:101215945 1022.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01772 Bhi-Chr5:56528248 Bhi10g01509 Bhi-Chr10:36879124 9.23E-14 dispersed
Bhi05g01771 Bhi-Chr5:56526709 Bhi05g01772 Bhi-Chr5:56528248 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g58 . . . . . . . . Cmo19g00714 . . . . . Sed05g2278 . Cpe15g00570 Bhi05g01772 Tan02g0739 Cmetu01g1464 . Hepe02g0458 . . Cla02g00473 Cam02g0479 Cec02g0481 Cco02g0486 Clacu02g0483 Cmu02g0478 Cre02g0813 Cone12ag1198 . . . . Csa07g00053 . Cme01g01317 Blo04g00545 . . Bda14g00584 Bpe15g00836 . Bma03g00578 . . . . . Cma19g00705 . Car19g00544 . . . . . . . . . . . . . . . . Lsi11g01152 . Chy01g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033301 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1248 PF01207 Dus 1.50E-45 CL0036 Bhi TF