Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01975 TATCTAATATTTAACCTCGAGATCCACTCATAAATTGAAGAAAAAAAAAAAGAAAAAATTCATGTGGAAAGACATACTTTCTCTGCAACTCGCCTGGCGTCTCCGGCCGCACCAATATAGATATAGATAATACGTACTCTTTAGGGTTTGGAGTCTAGTCTACTCTAGTCCCTTGCCTCTTTCAAATTCTCTAGCGTCTGGGATTAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGCGCGGCACCTGCCACTGCCACTGCCACTGCCGCTCCAACTCTTTCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTTCTGCCAGACTCGCTGTCCTCCAGTCTCTCCATAAAGCACTCTGTAACTGATCGTGCCTCCATGTTTTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCTCTTCATTCTCTTGGCCGGGTTCTGATGTTGCTGTTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGACGAAAACATCACCGATGGGATACTGATATGTTATAATTCTTTTTACTGCTTTCGCCACCAAATGGCATTCGAGATCGTGGGGCTTTGTTTTGGCTTCAGTGCTTCGATTCGTGGTGTTCGCTGTCTTTTTCGTATATTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATTCTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGGGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATGGTGAAGATCTTCCAGAAAGACTTGGGGAGCCAGATTGTCCATACTTTTTGAAAACTCAAAGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAAAGATAGGTCTGATTCTGTGGGTGCTGAGAAATCTGATGCGTTGACATTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTTAGTGTCAACTGCAAGTTCCATCACCCAAAAGATATCCAAACTTTATCAGGGGAAGAAAATGGAAATAGTGAACAAACTTTGATGGCTAAGACAGAAGAGAGAATTGGGGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCTCCAGCCCTAATACACAATTCTAAAGGACTTCCAATTAGACCGGGTGAGGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAACCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTCTCAGCTGCTAATATGAATACCGGAATTGTTAATCCTTCTAATGCTATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTAGCTCAAGTATTTACCCTCAACGACCCGGGCAGATAGAATGTGACGTTCTCTGAGGCTTAAGCATGAGGCGCGCAAATGAAAAAAAAGTTTTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCATCCTATAGATCGGTCAGCACCAAAGCAGGGTGCTCAACAGACTGTGAAACTAACACTAGCAGGACTACCGAGGAGAGAGG 1800 44.28 MANQLHGYNSVYGAAPATATATAAPTLSTTYSSSRSLSDIVSGRYLLPDSLSSSLSIKHSVTDRASMFSTQKEALMLSAADIVPRTSHLVSSFSWPGSDVAVALDSVVSGIKRSSDENITDGILICYNSFYCFRHQMAFEIVGLCFGFSASIRGVRCLFRILLYDQTVLGSYNTLGQSEAWYSSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANGEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDALTLPERPSEPLCAFYVKTGNCKFSVNCKFHHPKDIQTLSGEENGNSEQTLMAKTEERIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSAANMNTGIVNPSNAIYQAVDPRLIQPLLGSSSSIYPQRPGQIECDVL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60868876 60879888 - XM_039032826.1 Bhi05g01975 36185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01975 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 163 445 - -
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Bhi05g01975 473 Gene3D - 256 344 - -
Bhi05g01975 473 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Bhi05g01975 473 PANTHER CCCH ZINC FINGER/TIS11-RELATED 163 445 IPR045877 GO:0003729
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 207 232 IPR036855 GO:0046872
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 231 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 407 IPR000571 GO:0046872
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Bhi05g01975 473 Gene3D - 372 417 - -
Bhi05g01975 473 Gene3D - 171 244 - -
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 385 408 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01975 - - - bhj:120078547 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01973 Bhi-Chr5:60854503 Bhi05g01975 Bhi-Chr5:60868876 6.56E-07 dispersed
Bhi05g01975 Bhi-Chr5:60868876 Bhi10g01056 Bhi-Chr10:21255247 3.33E-11 dispersed
Bhi05g01974 Bhi-Chr5:60868876 Bhi05g01975 Bhi-Chr5:60868876 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1278 PF00642 zf-CCCH 2.90E-09 CL0537 Bhi TF