Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01975 TATCTAATATTTAACCTCGAGATCCACTCATAAATTGAAGAAAAAAAAAAAGAAAAAATTCATGTGGAAAGACATACTTTCTCTGCAACTCGCCTGGCGTCTCCGGCCGCACCAATATAGATATAGATAATACGTACTCTTTAGGGTTTGGAGTCTAGTCTACTCTAGTCCCTTGCCTCTTTCAAATTCTCTAGCGTCTGGGATTAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGCGCGGCACCTGCCACTGCCACTGCCACTGCCGCTCCAACTCTTTCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTTCTGCCAGACTCGCTGTCCTCCAGTCTCTCCATAAAGCACTCTGTAACTGATCGTGCCTCCATGTTTTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCTCTTCATTCTCTTGGCCGGGTTCTGATGTTGCTGTTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGACGAAAACATCACCGATGGGATACTGATATGTTATAATTCTTTTTACTGCTTTCGCCACCAAATGGCATTCGAGATCGTGGGGCTTTGTTTTGGCTTCAGTGCTTCGATTCGTGGTGTTCGCTGTCTTTTTCGTATATTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATTCTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGGGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATGGTGAAGATCTTCCAGAAAGACTTGGGGAGCCAGATTGTCCATACTTTTTGAAAACTCAAAGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAAAGATAGGTCTGATTCTGTGGGTGCTGAGAAATCTGATGCGTTGACATTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTTAGTGTCAACTGCAAGTTCCATCACCCAAAAGATATCCAAACTTTATCAGGGGAAGAAAATGGAAATAGTGAACAAACTTTGATGGCTAAGACAGAAGAGAGAATTGGGGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCTCCAGCCCTAATACACAATTCTAAAGGACTTCCAATTAGACCGGGTGAGGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAACCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTCTCAGCTGCTAATATGAATACCGGAATTGTTAATCCTTCTAATGCTATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTAGCTCAAGTATTTACCCTCAACGACCCGGGCAGATAGAATGTGACGTTCTCTGAGGCTTAAGCATGAGGCGCGCAAATGAAAAAAAAGTTTTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCATCCTATAGATCGGTCAGCACCAAAGCAGGGTGCTCAACAGACTGTGAAACTAACACTAGCAGGACTACCGAGGAGAGAGG 1800 44.28 MANQLHGYNSVYGAAPATATATAAPTLSTTYSSSRSLSDIVSGRYLLPDSLSSSLSIKHSVTDRASMFSTQKEALMLSAADIVPRTSHLVSSFSWPGSDVAVALDSVVSGIKRSSDENITDGILICYNSFYCFRHQMAFEIVGLCFGFSASIRGVRCLFRILLYDQTVLGSYNTLGQSEAWYSSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANGEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDALTLPERPSEPLCAFYVKTGNCKFSVNCKFHHPKDIQTLSGEENGNSEQTLMAKTEERIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSAANMNTGIVNPSNAIYQAVDPRLIQPLLGSSSSIYPQRPGQIECDVL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60868876 60879888 - XM_039032826.1 Bhi05g01975 36185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01975 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 163 445 - -
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Bhi05g01975 473 Gene3D - 256 344 - -
Bhi05g01975 473 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Bhi05g01975 473 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Bhi05g01975 473 PANTHER CCCH ZINC FINGER/TIS11-RELATED 163 445 IPR045877 GO:0003729
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 207 232 IPR036855 GO:0046872
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 231 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 330 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Bhi05g01975 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 407 IPR000571 GO:0046872
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Bhi05g01975 473 Gene3D - 372 417 - -
Bhi05g01975 473 Gene3D - 171 244 - -
Bhi05g01975 473 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Bhi05g01975 473 SUPERFAMILY CCCH zinc finger 385 408 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01973 Bhi-Chr5:60854503 Bhi05g01975 Bhi-Chr5:60868876 6.56E-07 dispersed
Bhi05g01975 Bhi-Chr5:60868876 Bhi10g01056 Bhi-Chr10:21255247 3.33E-11 dispersed
Bhi05g01974 Bhi-Chr5:60868876 Bhi05g01975 Bhi-Chr5:60868876 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1278 PF00642 zf-CCCH 2.90E-09 CL0537 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01975 - - bhj:120078547 926.776