Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g01981 GGTTGTTCCCTAAGCCGGTGCTTATGCTTTTAGGTTGAGAGAAGAAAGAAAAGATAAAAGAGAAGAAAAGTGGGGCCAGAGTGAATTGGGTAGAAGTATTAATTTGGGGTGGCATTTGTTCTCTTGAATCTGTCCGTATTCCCTTGGGAAATAGCAGCATCTAGAGAGAGAGAGAGACAGAGAGAGAGAGAATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTACAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACTGTCGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTCACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCAAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAAGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACCTGCAGCTGCGAATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTGCCGGCGGCTACAAGGCCATGGGGGGCGGCATCCCAACTAATAATAATAATAATCAGCAAAGCATTGGTGACATGGCCGGAGCCGGAGCCGGAGCCGGAGGGATTAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGGTTCATGGCTCACAACGATAGCTTACTGTGCTTGGGGAAGAAGAAGCCGAGGCCGCAGCCACCTACGTCAAACTATGGTGGCAGCGCGGGAAAAGGTGGGTTGGACTGGGCAGACGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGAATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGCAGTGTCGGATGAAGGCAATGGGGATCACAAGAACTATGACATCAATAATAATAACAATAATAACAATCATAATAATGCGTCTATAAAGCTTCAGAGGCCGTCCCCCCGAAGGTCACCCCTTTCCGTGGATAGGGCCAACCACCCTCTTACCACTGCTCTTCAGTCCACACATTCACCTTTTGGTTAATTTCCATTTATCTCTTTCAGTTTTTAATTTACAGTCGTCAATTAGGGGTTGACTTTGCATTTTGATGGACTCTACCCAGCGACCTACCAGACGAGGTACCGACACACAGTGTTTAAAGCCTTCCATGCCATATGCATATGTATATGTGCATGCAAAACCCTTTTGACCAACAATATCCCCTAGTAATTAATTATTTGTTTTTTCTTTTTGGTTGAATCAATCCCTCGTTACTGACATTGTACGAAGGATAGATAGCCTTCAAGTGTCACCAATATCTTACCTTTATAAATTTGATATCAATCAAATTGTCGATGAGTTGTTAATCTAATATGTTAAGTTTGTGATAA 1717 46.24 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAGGYKAMGGGIPTNNNNNQQSIGDMAGAGAGAGGIKDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFMAHNDSLLCLGKKKPRPQPPTSNYGGSAGKGGLDWADDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPAVSDEGNGDHKNYDINNNNNNNNHNNASIKLQRPSPRRSPLSVDRANHPLTTALQSTHSPFG 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61216090 61218712 - XM_039032877.1 Bhi05g01981 36191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g01981 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 296 - -
Bhi05g01981 392 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Bhi05g01981 392 Gene3D - 31 89 - -
Bhi05g01981 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Bhi05g01981 392 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Bhi05g01981 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 296 IPR044848 GO:0003700
Bhi05g01981 392 MobiDBLite consensus disorder prediction 329 392 - -
Bhi05g01981 392 MobiDBLite consensus disorder prediction 262 281 - -
Bhi05g01981 392 MobiDBLite consensus disorder prediction 342 365 - -
Bhi05g01981 392 Pfam MYB-CC type transfactor, LHEQLE motif 130 175 IPR025756 -
Bhi05g01981 392 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Bhi05g01981 392 MobiDBLite consensus disorder prediction 375 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g01981 - - - csv:101217821 691.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi05g01981 Bhi10g00928 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00234 Bhi-Chr1:4370350 Bhi05g01981 Bhi-Chr5:61216090 3.71E-74 dispersed
Bhi01g00235 Bhi-Chr1:4370350 Bhi05g01981 Bhi-Chr5:61216090 2.34E-74 dispersed
Bhi03g00735 Bhi-Chr3:13713007 Bhi05g01981 Bhi-Chr5:61216090 1.21E-50 dispersed
Bhi05g01981 Bhi-Chr5:61216090 Bhi10g00928 Bhi-Chr10:19061804 4.75E-114 dispersed
Bhi05g01980 Bhi-Chr5:61216090 Bhi05g01981 Bhi-Chr5:61216090 0 tandem
Bhi05g01981 Bhi-Chr5:61216090 Bhi05g01982 Bhi-Chr5:61216090 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1280 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Bhi TF