Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g02096 ACCAACTTGCTTGGTCCACCCATTCCCTCTTTTTCTTTTTTTTTAACTGTCCAAATATTTTCCCAATAAAGATAGAAGAAAAGTTTTCGTCGGAATCGGAATCAGAATCGGAACCGGAACTGGAACATTCCACCACCGCCGCCTGAATATCTCCTCCGATCCCGATCTCCATTTTTCCACTTCATTTCATCCTTCTCAATTCCTTCTTCTTCTTCTTACACTCCGTCATGACAATCGACCACCACTCGCAACACTCCGATCAAACGACCCATGATGATTCCGACCATCTCCATCCTACTCTTCCCGTGCCACTTGTTTCCAATGGCGCCGACTGCGAGAATGAAGGAGATAACCTCTTCGTTCCTCCTCTGAACTTCGCCGTCGTTGACAGCGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACATTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAATATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCGGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGGCGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTTTACGATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGCCCGGTTTTAATCCATTGCAAACGGGGGAAGCACCGAACTGGTTGTGTCGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTCTTTGATGAATATCAACGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTTATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCATCATCACTTTCTTGTTCAGAAAGGTAATTGTCCTCTATGCCTGTGAGGATGTTCATTAGTAAAAGAAGAAGACACCCAATAAATGACGAGCCATTCTGAAGTTTTTCACTTTTCATTGGCCTAATTACTTGTCATTCTTTAAGCCTCACACATTTCAGTTCAAGTGATTAACTCCCCTTTGTATTGTATATTTACTATTCCCAAACTATACTTATGGTTATAAATCCATCAGGGGGTTCATTAGGATTAACCCCAATCATATGTACTAGAATTCCAAGAACATGAAAGTTATAGTCAAAATCGAAAAGAAGATTTGGTATCTTTTTTAGCTTTA 1245 42.01 MTIDHHSQHSDQTTHDDSDHLHPTLPVPLVSNGADCENEGDNLFVPPLNFAVVDSGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSGDQMYYLEPFVNIPDFTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSLSCSER 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63867596 63870657 + XM_039032335.1 Bhi05g02096 36306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g02096 236 MobiDBLite consensus disorder prediction 1 24 - -
Bhi05g02096 236 Pfam Tyrosine phosphatase family 45 225 IPR004861 -
Bhi05g02096 236 Gene3D Protein tyrosine phosphatase superfamily 43 223 IPR029021 -
Bhi05g02096 236 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 221 IPR029021 -
Bhi05g02096 236 PANTHER - 14 235 - -
Bhi05g02096 236 MobiDBLite consensus disorder prediction 1 22 - -
Bhi05g02096 236 CDD PFA-DSP_Siw14 43 220 - -
Bhi05g02096 236 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 235 - -
Bhi05g02096 236 ProSitePatterns Tyrosine specific protein phosphatases active site. 169 179 IPR016130 GO:0016311|GO:0016791
Bhi05g02096 236 PRINTS Plant and fungal dual specificity phosphatase signature 44 61 IPR020428 GO:0016791
Bhi05g02096 236 PRINTS Plant and fungal dual specificity phosphatase signature 81 94 IPR020428 GO:0016791
Bhi05g02096 236 PRINTS Plant and fungal dual specificity phosphatase signature 100 114 IPR020428 GO:0016791
Bhi05g02096 236 PRINTS Plant and fungal dual specificity phosphatase signature 147 161 IPR020428 GO:0016791
Bhi05g02096 236 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 233 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g02096 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - csv:101209768 347.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g02096 Bhi-Chr5:63867596 Bhi05g02097 Bhi-Chr5:63867596 5.13E-148 tandem
Bhi10g01060 Bhi-Chr10:21444321 Bhi05g02096 Bhi-Chr5:63867596 1.67E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi09g01578 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi09g01577 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi02g00621 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.9 0.0e+00 1097.0
Bhi12g01807 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01805 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01806 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi05g02087 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi05g02088 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi07g00747 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 2.3e-114 409.5
Bhi07g00476 . 99 325 Protein tyrosine phosphatase (PTP) family AT3G10940 78.1 1.9e-108 389.8
Bhi11g01647 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01648 . 2 450 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01646 . 141 550 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 8.9e-185 644.0
Bhi10g01060 CCT 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.5e-75 280.4
Bhi05g02096 . 28 236 Protein tyrosine phosphatase (PTP) family AT2G32960 62.6 1.7e-71 266.9
Bhi05g02097 CCT 28 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.1 3.2e-70 262.7
Bhi02g01339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.0e-55 212.2
Bhi11g00051 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.6e-101 367.1
Bhi06g01678 . 106 357 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 1.2e-80 297.7
Bhi06g01678 . 121 312 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 2.0e-45 179.9
Bhi10g01060 CCT 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 2.5e-78 289.3
Bhi05g02097 CCT 27 206 Protein tyrosine phosphatase (PTP) family AT4G03960 71.7 5.3e-73 271.6
Bhi05g02096 . 27 236 Protein tyrosine phosphatase (PTP) family AT4G03960 61.4 3.0e-68 255.8
Bhi02g01339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 6.3e-58 221.5
Bhi02g01339 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 1.7e-79 293.1
Bhi10g01060 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 2.1e-56 216.5
Bhi05g02097 CCT 35 201 Protein tyrosine phosphatase (PTP) family AT3G02800 56.9 1.5e-54 210.3
Bhi07g00941 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00939 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00938 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00937 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00940 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi05g01088 . 33 614 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.8e-220 761.1
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G19420 62.2 6.6e-199 691.4
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi10g00068 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.8 2.1e-69 260.0
Bhi11g00140 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi11g00141 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi03g02108 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 2.3e-285 978.8
Bhi03g02108 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.0e-258 890.2
Bhi03g02108 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.9 8.6e-186 647.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83