Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00113 AGGAAAAAAAGAAATTAGCCTAAGGGGTCGCTTCATTGTCCAGTACGAAATTTTTCGAACCGGTTTCCGTCATTCCCTCGCTTGCTGATCGAACCCTCCGTTTTCAGCTCATCCAGAAGCGGAAGCAGAAGCAGAAGCAAGATGATGAAGCTACAGCGCTGGTTATCCAGGAACCAGCTATTTGAACAAATTGTATGTAAGAAAGCTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAGAATTTTACTCGTACAGTTGGAGAGAATGCAAGTGATCGAGTTTATGCTGCATATAGTGTATATAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTTTACCAACTTTCACCAAATTAGAGTCTGGGTGTCTTGTAATTGGTCGACGTGGTTCAATAATGTTGACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTATCCCCAACAGAGGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTAACTATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCAGAAAACACCAAAAATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGTTCTGCCTCACATTCTTGGTTGGGACCAGCTAAAGAAACCTAGTCCTGGCATGGGTAAGGTTTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGAGTGTTCATAGAAGTTGCTGTCACCTCCATGAAGCTGCTAAGTTCAAAAGTGGGCTATTGTACCTGCTTTTTTGGGTAAATCTTTTGTTATCTCGTCAATTGTTGTAGTGATGGGTGCAGCCTTTGAATTTTGCTTTACAGAAACAAAGGCAGTGGTTTATTTGGGTGGAACTTTCCATTCCAGAAAAATGAAGTAACAATGTATACAAGTGTTGAGTACTCTTGTTAACTTGGAGTGAATTAGAGATGCCTTTTGGAAGTTGGAACTGTTTTTAGCCTGATAAAATTACTTTTCAAAAA 1166 41.42 MMKLQRWLSRNQLFEQIVCKKAGHVGHPLGSHPFSSRVGIPDSRQNFTRTVGENASDRVYAAYSVYKGKAGLSMMPCLPTFTKLESGCLVIGRRGSIMLTFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSSAGQVRKSLTIKAHADGNGYFISLNVVNNSENTKNFLSVPFTAGEFSVMKTACSFVLPHILGWDQLKKPSPGMGKVFQPNKVDREALSLEWER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3140253 3151305 + XM_039035136.1 Bhi06g00113 36452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00113 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 239 IPR009044 GO:0003677|GO:0006355
Bhi06g00113 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 218 IPR009044 GO:0003677|GO:0006355
Bhi06g00113 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bhi06g00113 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 - -
Bhi06g00113 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00113 - - - csv:101219085 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01268 Bhi-Chr4:32421701 Bhi06g00113 Bhi-Chr6:3140253 1.02E-50 dispersed
Bhi04g01269 Bhi-Chr4:32421702 Bhi06g00113 Bhi-Chr6:3140253 5.31E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1756 . . . Bda03g00364 . Bpe04g00326 . . . . Cma01g00881 . Car01g00805 . . . . . . . . . . . Cla08g00178 . Cec08g0075 . . Cmu08g0168 Cre08g0158 . . . . . . . Cme09g00121 . . . . . . . . Sed08g1728 Cmo01g00923 . . . . . . Cpe02g00983 Bhi06g00113 Tan10g1838 Cmetu09g1050 . . . . . . . . . . . Lsi08g00178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g01269 . 21 270 Whirly Transcription Factor Family AT1G14410 66.4 8.8e-92 334.3
Bhi04g01268 . 21 271 Whirly Transcription Factor Family AT1G14410 66.1 1.2e-91 334.0
Bhi06g00113 . 56 214 Whirly Transcription Factor Family AT1G71260 66.0 1.1e-56 217.6
Bhi04g01269 . 5 270 Whirly Transcription Factor Family AT2G02740 62.8 5.3e-92 335.1
Bhi04g01268 . 5 271 Whirly Transcription Factor Family AT2G02740 62.5 6.9e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1293 PF08536 Whirly 2.80E-52 CL0609 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00113 Bhi_Chr06 FPKM 0.675998 0.602508 0.997994 1.243736 3.427537 4.177933 3.582235 1.626746 1.08946 1.702495