Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bhi06g00113 | AGGAAAAAAAGAAATTAGCCTAAGGGGTCGCTTCATTGTCCAGTACGAAATTTTTCGAACCGGTTTCCGTCATTCCCTCGCTTGCTGATCGAACCCTCCGTTTTCAGCTCATCCAGAAGCGGAAGCAGAAGCAGAAGCAAGATGATGAAGCTACAGCGCTGGTTATCCAGGAACCAGCTATTTGAACAAATTGTATGTAAGAAAGCTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAGAATTTTACTCGTACAGTTGGAGAGAATGCAAGTGATCGAGTTTATGCTGCATATAGTGTATATAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTTTACCAACTTTCACCAAATTAGAGTCTGGGTGTCTTGTAATTGGTCGACGTGGTTCAATAATGTTGACATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTATCCCCAACAGAGGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTAACTATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCAGAAAACACCAAAAATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGTTCTGCCTCACATTCTTGGTTGGGACCAGCTAAAGAAACCTAGTCCTGGCATGGGTAAGGTTTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGAGTGTTCATAGAAGTTGCTGTCACCTCCATGAAGCTGCTAAGTTCAAAAGTGGGCTATTGTACCTGCTTTTTTGGGTAAATCTTTTGTTATCTCGTCAATTGTTGTAGTGATGGGTGCAGCCTTTGAATTTTGCTTTACAGAAACAAAGGCAGTGGTTTATTTGGGTGGAACTTTCCATTCCAGAAAAATGAAGTAACAATGTATACAAGTGTTGAGTACTCTTGTTAACTTGGAGTGAATTAGAGATGCCTTTTGGAAGTTGGAACTGTTTTTAGCCTGATAAAATTACTTTTCAAAAA | 1166 | 41.42 | MMKLQRWLSRNQLFEQIVCKKAGHVGHPLGSHPFSSRVGIPDSRQNFTRTVGENASDRVYAAYSVYKGKAGLSMMPCLPTFTKLESGCLVIGRRGSIMLTFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSSAGQVRKSLTIKAHADGNGYFISLNVVNNSENTKNFLSVPFTAGEFSVMKTACSFVLPHILGWDQLKKPSPGMGKVFQPNKVDREALSLEWER | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3140253 | 3151305 | + | XM_039035136.1 | Bhi06g00113 | 36452 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bhi06g00113 | 241 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 56 | 239 | IPR009044 | GO:0003677|GO:0006355 | |
| Bhi06g00113 | 241 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 51 | 218 | IPR009044 | GO:0003677|GO:0006355 | |
| Bhi06g00113 | 241 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 1 | 241 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Bhi06g00113 | 241 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 1 | 241 | - | - | |
| Bhi06g00113 | 241 | Pfam | Whirly transcription factor | 65 | 199 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bhi04g01268 | Bhi-Chr4:32421701 | Bhi06g00113 | Bhi-Chr6:3140253 | 1.02E-50 | dispersed | |
| Bhi04g01269 | Bhi-Chr4:32421702 | Bhi06g00113 | Bhi-Chr6:3140253 | 5.31E-50 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 1293 | PF08536 | Whirly | 2.80E-52 | CL0609 | Bhi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bhi06g00113 | - | - | csv:101219085 | 389.037 |