Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00143 TGAGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGCACCTCCATTGAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGATTCTGTGTGAATATGCCGAACACAATGATGCAATTTTGCTAGTTATTGTACCAGCAGCTCAGGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGATCTGCCAAGGAATTTGATAAAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAATCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCGTCAGATATCCCATGGGTTGCTTTAATTGGTCAATCTGTTTCAATAGCTACTGCACAGTCTGGATCTGTTGGCTCTGAGAATTCCATGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGGTGCACTGTCCCAACAGATCCGGAAGTGCATGAAAGTGCGGCTTCCTAATCTTCTCTCTGGGTTACAAGGGAAGTCTCAAGTTGTTCAGGATGAGTTGGTTAGGCTTGGTGAGCAAATGGTGAATGGTGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTTGAGGGGAATTTTCCAAATCGAATTAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATTGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATCTCACCAGAGAAAGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCGAAAGAACCATCACGTCTCTGTGTTGATGAGGTGCATAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTACTGCACTGGATGGGTTTAAAAATGAAGCAAAAAAGATGGTTGTGGCGTTAGTTGACATGGAGCGAGCATTTGTCCCACCACAACACTTCATACGTCTTGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGCACAAGAGGCTGAACAAGCGGTGTCAAACAGGGAAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAGCAAGAGAAGGAAGAGAAGGAAGAGAAGGAAAGTTCGGGTTTGAAGACAGCAGGTGTTGAGGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTACAAAAACTAATGGATGGAGCAGGCGATGGTTTGTTTTGAATGAGAAGACTGGGAAGCTTAGATACACCAAGAAGCAAGAAGAAAGATACTTTCGTGGTGTCATTACTTTAGAGGATTGTAATATCGAAGAAATTACAGATGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCAGACTCTGGAAAAGGATCAAGTCTTGTGTTTAAGATTACCAGCAAGGTTCCATATAAAACTGTTTTGAAAGCCCATACTGCTGTTGTTTTGAAAGCGGAGAGTGCTGCAGACAAGGTGGAATGGACAAACAAGATACGCAATGTCATTCAACCATCCAGAGGAGGACAAACTAGAGGTGCATCCTCCGAAGGTGGTCTTACCATGCGGCAGAGTCTATCTGATGGTTCTCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAACTGAGGTGGATGTCTCAAGAAGTTCGTGGTTATGTTGAAGCAGTTTTGAATAGTTTGGCTGCAAATGTTCCCAAGGCTGTTGTCCTTTGTCAAGTTGAGAAGGCCAAGGAAGACATGCTAAATCAATTATATAGCTCGATCAGTGCCCAAAGCTCGGCTAGGATTGAGGAGCTTCTTCAGGAGGACCAGAATGTAAAACGGAGGAGAGAACGTTATCAAAAACAATCTTCTCTCCTTTCAAAACTTACGCGCCAGCTCAGCATTCACGATAATCGAGCAGCTGGTGCTGGTTGGTCCGATAGTGGTGCAGAAAGTAGTCCCAAAACTAGCGGATCACCTGGAGATGAATGGAGATCTGCATTTGATGCTGCTGCTAATGGTCGGGTTGATTACAGAAGATCTTCTTCCAATGGCCACAGTAGACATTCAAGTGATCCCGCACAAAATGGTGACATAAACTCAGGTTCAAACTCTAGCAGCCGTCGTACTCCAAACCGGCTGCCACCAGCGCCTCCGCAGTCGTCTTCTGGTTCCAAATACTTCTAGCACTATAACAGATCTTACTTGATGCTTCATATTGTCTCTGCAACATTGGGCAAGATTAAGCTCCACTTCATGATTCATTTAGTGATCTCCTCAAGCTCATATTCTACTAGAAACATAAAAGTGGAGAGGTTTGTGTATATATAACATTTCTTAGTGTCAGGTTATACTGTTGTCTTCATATACAATACTAGATTCAAGGGATTCTTGATTTTTTTTCCCCCCTCTTTAAGGTTTTGTTCTACCATTGCCCCATTCATTTTTGGACAAGAAACATGTATTTGAATGTATCAGTTATGATTTTGTATGTACCACAATCCATCTCTGATGGGTTATATATAATATTCAGTTATTAGTGGAGTGAGGGTTGTAATTT 2824 42.74 MILCEYAEHNDAILLVIVPAAQAPEIASSRALRSAKEFDKDGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATAQSGSVGSENSMETAWRAESESLKSILTGAPQSKLGRLALVGALSQQIRKCMKVRLPNLLSGLQGKSQVVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASTALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKAQEAEQAVSNRESSPQTNSQQAGGSLKSMKEKPSKQEKEEKEEKESSGLKTAGVEGEITAGFLLKKSTKTNGWSRRWFVLNEKTGKLRYTKKQEERYFRGVITLEDCNIEEITDEEEPTPSKSSKDKKANGPDSGKGSSLVFKITSKVPYKTVLKAHTAVVLKAESAADKVEWTNKIRNVIQPSRGGQTRGASSEGGLTMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSARIEELLQEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRAAGAGWSDSGAESSPKTSGSPGDEWRSAFDAAANGRVDYRRSSSNGHSRHSSDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSSGSKYF 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3502880 3512216 + XM_039033926.1 Bhi06g00143 36482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00143 770 Coils Coil 644 664 - -
Bhi06g00143 770 SMART GED_2 585 671 IPR003130 GO:0003924|GO:0005525
Bhi06g00143 770 MobiDBLite consensus disorder prediction 369 394 - -
Bhi06g00143 770 SMART PH_update 424 551 IPR001849 -
Bhi06g00143 770 Gene3D Dynamin, middle domain 180 389 - -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 729 753 - -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 680 770 - -
Bhi06g00143 770 PANTHER DYNAMIN 3 700 IPR022812 -
Bhi06g00143 770 PANTHER DYNAMIN-2A 3 700 - -
Bhi06g00143 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 160 IPR027417 -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 478 505 - -
Bhi06g00143 770 Gene3D - 2 167 IPR027417 -
Bhi06g00143 770 SUPERFAMILY PH domain-like 425 549 - -
Bhi06g00143 770 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 1 151 IPR030381 GO:0005525
Bhi06g00143 770 Pfam Dynamin central region 103 342 IPR000375 -
Bhi06g00143 770 Pfam Dynamin GTPase effector domain 588 670 IPR003130 GO:0003924|GO:0005525
Bhi06g00143 770 MobiDBLite consensus disorder prediction 397 417 - -
Bhi06g00143 770 ProSiteProfiles PH domain profile. 423 549 IPR001849 -
Bhi06g00143 770 Gene3D Dynamin, middle domain 565 658 - -
Bhi06g00143 770 ProSiteProfiles GED domain profile. 590 683 IPR020850 -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 482 499 - -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 550 586 - -
Bhi06g00143 770 Pfam PH domain 428 548 IPR001849 -
Bhi06g00143 770 Gene3D - 408 552 IPR011993 -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 550 576 - -
Bhi06g00143 770 MobiDBLite consensus disorder prediction 356 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00143 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1350.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g02550 Bhi06g00143 CCT
Bhi04g02550 Bhi06g00143 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00143 Bhi-Chr6:3502880 Bhi01g00142 Bhi-Chr1:2975706 2.40E-08 dispersed
Bhi06g00142 Bhi-Chr6:3501119 Bhi06g00143 Bhi-Chr6:3502880 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033308 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00143 Bhi_Chr06 FPKM 60.17897 65.088783 5.676887 5.691652 15.865164 14.027314 16.093279 0.0 0.124364 0.0