Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00164 AAAGAAAAGAGAAAAGAAGTCGCATTCAAAGGTCAGTCGTCTGATATGGACGAACCGTAGAAAAAGTTTTGAAAATCAATGGAAATTCCAAATTTTTTCTGCTAATTCAGTAATTCTTCTCTATCACCTTCACCAAGTCGTCAATGGCTTCCTCAACCACAAAGCAATTAGCTGCTGCTTCTTCTTCTTCTTCTCCTAGATACACGTTTGACGTCTTTCTCAGCTTCAGAGGCGAGGACACTCGCAAGAACATCACCAACCATCTTTACGAAGCTCTGAGGCGACAGGGCATCGTTGTTTTCAGAGATGACGATGAACTCGAGAGAGGGAAGACCATTGGTGGTACGCTAACCAAATCGATCAAGGAATCCAGGTGTACCATTGTTATTCTCTCTGAAAGATATGCAGATTCCAAATGGTGCTTGAGGGAATTGGCTGAGATTGTCGATTCCAAGAACACATTAGGTCAACTGGTTCTCGCGGTTTTCTACAAAATTAGTCCCTCCGATGTCATCAGTCCTACTGGGATTTTTGAGAAATTCTTTATTGGATACGAAAATGATCCTAAGGAGAAATTTGACGAGGTTCAGAGCTGGAGGAACGCCATGAAAGTAGTTGGAGGTCTCCCTCCATGGCTTGTAAACGAGGAGACCGAAACAGAGAGAGTCCAAAACATTGTTAAGCATGCTTTCAATCTTCTGCGTCCTGATTTGCTTAGTAATGATGAGAATTTGGTTGGCATGAACTTGAGATTAAGCAAAATGAATATGCTTATGGGCATAGGGTTGGATGATAAGCGCTTTATTGGGATATGGGGGATGGGTGGAATAGGCAAGACAACTATTGCCAAAGCTGTTTTCAAAAGTGTGGCCCGTGAATTCCATGGAAGTTGCTTTCTGGAAAATGTTAGGAAAACTTTGAAGGATGTTGGAGGCTTAGTATCCTTGCAGCAGAAACTTCTGTCCGATACTCTAATGAGAGGAAAAGTTCACATTAAAGATGGTGATGGAGCTGTGATGATAGAGAAAAACCTAAAAAATAAAAAGGTTTTTGTTGTTTTAGATGATGTTGATCATTTGAGCCAGGTGAAAGAACTGGCAAGAGGAGAAGAATGGTTTGGTTGTGGAAGTAGAATCATCATTACAACTAGAGATGAAGGTTTGCTTCTTTCTCTTGGAGTTGATATAAGATACAATGTTGATAGTTTCAGTGATGAAGAGGCTCTTCAGCTCTTCTGCCATGAAGCATTTGGGGTAAAGTTTCCCAAGAAAGGTTATCTGGATCATTGTATGCAATTTATAGAATACGCTGAGGGCCTTCCATCAGCAATCAAGGCTCTTGGGTATTCCTTGCACGGTAGATTGATTCCGTCATGGGAAGATGGCATAAGAAAGTTAAATGTTTCTTTAAACAGGGAAATATATGAAAATTTGAAAATTAGTTATGATGCACTAGGAACGCAAGAGAGGATATTCTTTTTGGATATTGCTTGTTTTCTTAAAGGACAGAGCAAAGACATAGTCATTGACACATTCGTGAATTTTGAAATTGATGCTGCTTATGGACTTCTTACCAAAAAGGATGATGCAAATGAACTTATAAAAAAATTTGCTGCTGATGCACTAAAAAATTTGCAGGAGAAATCCCTCATAACTGTGCCTAATAACAAAATACAGATGCATAATTTACTCCAAAAACTAGGTCAAGAAATCTTTCGTGGGGAGTCATCGGGAAAATGTAGTAGGCTATTTCATCGAAAGGATATGAACCATGCTTTAAGGCATAAACAGGGAGTTGAAGCCATTGAAACCATTGTCTTGAACTCGAACGAGCATGGAGAGTCGTACTTAGATGCCAAGTTCTTTTCAGCAATGACCGGTCTAAAAGTGTTGCATGTTCATAATGTATTCCTATCTGGAGATCTTGAGTATCTCTCAAACAAGTTGAGACTTCTCAGTTGGCATGGATATCCCTTCAGGCATTTACCATCGGGTTTCAAGCCAAGTGAACTATTGGAACTCAATTTACTGAATAGCTGCATTGAAAATCTTTGGAGAGAAACAAAGAGGTTGGATAAATTGAAGATAATAAACCTTAGTAATTCTGTATTCTTGTTGAAGACCCCTGATCTGTCAATGGTGCCAAATCTTGAGAAGTTGGTCTTGAATGGTTGTATAAGACTAGAGGAGCTTCACCAATCTGTCGGAACTCTGAAGCATCTAAGCTTATTGGATCTTAAGGATTGCAAATCTCTCAATACCATTTGTTCTAATATTTGTCTTGAGTCACTCAAGATTTTCATTCTTTCTGGTTGTTCAAAACTGGAAAAATTTCCGGAGATTGTGGAAAACATGAAACTTGTGACAGAGCTTCATTTAGATGGCACTGCTATACGAGAATTGGATGACTCGATTGGAAAACTCACTGGCCTCGTTTTGTTGGATCTTAGAAACTGCAAAAATCTTCTTACACTTCCAAACACCATTGGTTGCTTAACATCCATTGAACATCTCGCATTGGGTGGATGCTCAAAGCTTGATCAAATTCCTGACAGCTTGGGGAACATTTCTTGTTTAAAGAAGCTTGATGTTCTGATTTTTAGTGATTGCAAGCTGGTAGATGGAGACATACCCAACAACCTCAGCTGTTTGTCTTCATTGCAATTTCTGGATCTAAGCAGGAACCTTTTCACCAACCTGCCTGATAGTTTGAGTGAACTTATCAATCTCAGATGCCTTGTATTGGACAACTGCAGTAGGCTCAGGTCAATACCGAAGCTCCCAGGCAGTATACGTTATGTACTCGCCAGGGATTGTGTCTCACTGAAAGAACACTATAACCAAGAAGATCACAGGCCTCTAAGTGAAACAGAAGTAAGGGTCCTTAGTTACCCCACGTCTGCTGAACACCAAAACTCCAAAATCACCCGGTTAATGATGTCAGGTATGTGCACAGCATGGGAGAACGGGGGTTGAAGATAGTATCAGGTATTTTTTTCCTTTTTCTTCTCACTTTGTTAACTTCCATTAAGATGCATTCAGTACACCAAATTGAAAAGATAGCTCTTGATGTTATGTACTTCGAATCGTTACTACTTACACTTTGCATGTTGTATCAATCATATCTTTTAACTCGTATTTCTTCTTTTCCCAGCCTACAGTCTACACTTTGCCAGTCAGCCATACAAAATATAGTTACAAAACGGGGGATTAGTAACTAGTATTTGGTTTTGTATGGCTTTAATTTTTAATCGGATTCTGATTGTAATTTTAATTTGGACGTACTTTAGTTTCATAGTAACAAGTTCCAAGGACAAATCATTCATTAGACCTCTTTATACCAAAATTCTTTATACGGTTTGTCTTCCTTGGTCATTGATTGGAAGCCGATAGTTTAATTCTTTATATGGTTTGTTTTCCTTGGTCAATTCTAGGACTCTTATTTGGCTTGTTTTATGCTGTGCTGTAATTGTATGCTTTGATATTGTTTATTGTTGTATTTATAGGAACCAAGCTCTTGGATAGAGATGGAAGACTTTGAAAGAAGAAACCAAAGTCAAGGTGGAAGCATCTCAATGCATCCAGACAGTTAGAGTGTACATGGGTTTGGTTGAGTTGAGAGGATTTTTTGGACCAATCATCAATTTGGGTAGGTTGGGTGAGGTACTAGAAACACATGAACAATGAGTTCGACGAGACTCAACCCATGTTAATAATTATAAATTTAGGCCTTGTAGTGAAAAAAATATTTTCAAAATTAAGTGTCGATTTTTTATGTTACGAATTAGTCTTTATATTTTATTAAAAAAAAAAAAAA 3816 38.39 MASSTTKQLAAASSSSSPRYTFDVFLSFRGEDTRKNITNHLYEALRRQGIVVFRDDDELERGKTIGGTLTKSIKESRCTIVILSERYADSKWCLRELAEIVDSKNTLGQLVLAVFYKISPSDVISPTGIFEKFFIGYENDPKEKFDEVQSWRNAMKVVGGLPPWLVNEETETERVQNIVKHAFNLLRPDLLSNDENLVGMNLRLSKMNMLMGIGLDDKRFIGIWGMGGIGKTTIAKAVFKSVAREFHGSCFLENVRKTLKDVGGLVSLQQKLLSDTLMRGKVHIKDGDGAVMIEKNLKNKKVFVVLDDVDHLSQVKELARGEEWFGCGSRIIITTRDEGLLLSLGVDIRYNVDSFSDEEALQLFCHEAFGVKFPKKGYLDHCMQFIEYAEGLPSAIKALGYSLHGRLIPSWEDGIRKLNVSLNREIYENLKISYDALGTQERIFFLDIACFLKGQSKDIVIDTFVNFEIDAAYGLLTKKDDANELIKKFAADALKNLQEKSLITVPNNKIQMHNLLQKLGQEIFRGESSGKCSRLFHRKDMNHALRHKQGVEAIETIVLNSNEHGESYLDAKFFSAMTGLKVLHVHNVFLSGDLEYLSNKLRLLSWHGYPFRHLPSGFKPSELLELNLLNSCIENLWRETKRLDKLKIINLSNSVFLLKTPDLSMVPNLEKLVLNGCIRLEELHQSVGTLKHLSLLDLKDCKSLNTICSNICLESLKIFILSGCSKLEKFPEIVENMKLVTELHLDGTAIRELDDSIGKLTGLVLLDLRNCKNLLTLPNTIGCLTSIEHLALGGCSKLDQIPDSLGNISCLKKLDVLIFSDCKLVDGDIPNNLSCLSSLQFLDLSRNLFTNLPDSLSELINLRCLVLDNCSRLRSIPKLPGSIRYVLARDCVSLKEHYNQEDHRPLSETEVRVLSYPTSAEHQNSKITRLMMSGMCTAWENGG 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3879119 3883884 + XM_039034070.1 Bhi06g00164 36503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00164 943 Pfam TIR domain 22 192 IPR000157 GO:0007165
Bhi06g00164 943 SMART till_3 21 161 IPR000157 GO:0007165
Bhi06g00164 943 Pfam NB-ARC domain 217 428 IPR002182 GO:0043531
Bhi06g00164 943 SUPERFAMILY L domain-like 512 878 - -
Bhi06g00164 943 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Bhi06g00164 943 Gene3D - 19 187 IPR035897 -
Bhi06g00164 943 Gene3D - 354 438 IPR042197 -
Bhi06g00164 943 ProSiteProfiles Leucine-rich repeat profile. 838 859 IPR001611 GO:0005515
Bhi06g00164 943 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 883 - -
Bhi06g00164 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 883 IPR044974 GO:0006952
Bhi06g00164 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Bhi06g00164 943 Gene3D - 188 348 IPR027417 -
Bhi06g00164 943 Gene3D Ribonuclease Inhibitor 731 908 IPR032675 -
Bhi06g00164 943 Gene3D Ribonuclease Inhibitor 525 730 IPR032675 -
Bhi06g00164 943 PRINTS Disease resistance protein signature 220 235 - -
Bhi06g00164 943 PRINTS Disease resistance protein signature 296 310 - -
Bhi06g00164 943 PRINTS Disease resistance protein signature 389 403 - -
Bhi06g00164 943 PRINTS Disease resistance protein signature 688 704 - -
Bhi06g00164 943 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00164 - - - csv:101221455 1399.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00164 Bhi-Chr6:3879119 Bhi06g00166 Bhi-Chr6:3879120 0 dispersed
Bhi06g00164 Bhi-Chr6:3879119 Bhi06g00165 Bhi-Chr6:3879120 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00164 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013794 0 3 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 0 1 1 0 1 1 1 3 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00164 Bhi_Chr06 FPKM 10.283117 11.626806 13.36707 12.202566 7.17473 4.691809 7.012776 13.643693 13.986963 13.587919