Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00189 CGAAGACTAAGTCCCAAGAACCACACAATAGCTTAGGATATGGAGATAAAAATGACATAATAGTAAAAGCTCAAGCAAAACCAGATCTCTCCAATGGCGGCTTCTTCTTCAACTGGCCGTAGATGGAAATATGATGTGTTTTTGAGCTTTAGAGGTGAAGATACACGTGGTGGCTTCACAGACCATCTCTACCAAGCCTTATCGCGTAAAGGAATATCGACATTTAGAGACGAAAATGAGATCAAAGAAGGTAGTGAAATTTCTTTAGATCTTTCAGCCGCCATCGAAGCGTCAAGATTTGCAATCGTTGTGGTATCAGAAAACTATGCTTCTTCAAGATGGTGTCTCGGAGAATTGGTTAAGATCTTCGAATGCCAAGATCAGTTCGGAACGACTGTTTTACCAATTTTTTACAAAGTGAATCCTTCTCTTGTAAGAAATCAGAGAGGAAGTTTTGGTGATGCTTTTCTTAAACATGAAGAAAGATTTGGAAAAGATGAGTTTAAGGTCCAAAAGTGGAGGCAGGTTCTGACCAACATTGCCAACCTTAAAGCATGGCTTCCCCAAGATTGGTCATATGAATCAGAAGTGATAGAAAAAATCTGTGAAGAAATATGGAAAAGAATCAAAAAGAGCTTAACAACAGTCATTGAAGAAGGCCAACTTATAGGAATCACATCAAAACTAAACCAAATATCTTCACTTTTAATCCCAAACTCAGAATCAGAAAATGATGTGATGTTCATAGGAATACATGGAATGGGTGGCATTGGCAAGACGACAGTAGCTATGGCTCTCTACGAGCAAATTCACGACGAATTCGAAGCTCATTGCTTCCTCTCGAACATTCGAGAGACTTTCAAGACCCACAATCTTCCCTATTTACAATCCAAACTCCTCACAAAGATGTTTGCAATAAACAACAATGACATATATGATGCTCAAGAAGGCATTGCTTTGATAACCAAAGCAATTTCTCAAAAAAAGTCACTTCTTGTACTAGATGATGTGGATCAACTAGAACAAATCACTGGATTAATTCCAATTACGAAGAAATGTTGTTTCGGATACGGTAGTCGAGTCATCATTACAACAAGAAATGCAGATTTGATGTCGATATTTGAAGCGAAACGAATGTTCAAAATGGGAGAACTTGAATACAAGGAAGCAATTGAGCTCCTTAGTTTGAATGCTTTCATGGAAAAATGTCCTAAAGAATGTTACTTGGATCACGCCAAAAGTATTGTGAAGCTTGTGGGAGGCCATCCTCTTGCACTCAAAGTGTTAGGGACATGTTTGAGAAACAAAGATTTGAGTGTGTGGAATTGTGTACTACAAGAGCTCCAAGAAGGTGGGAACATTATTGTTCATGAACAAATTTTCAAGTGTCTTAAAGTAAGTTATGATGGATTAGATGAAAAGGAAAAGGTGATTTTTCTTGATGTTGCTTGCTTCTTCAAGGGAAAGGCAAGAGATGTTGTAGAAGAAATTCTAGATGGGTGTGGTCTTTATGCCAAAAGAAGGATTCAACTTCTAATTCAAAAATCTCTTATAACATTATCTCATGACAATAAATTACAAGTACATGATTTGTTGCAAGAAATGAGTTGGAGAATCGTTCGTCGAAAACTCGTTCAAGATCGATTTTGGTGCCACAAAGATATCATCAAAAATGTGTTTCAGGATACAAAAGCAGACATCCAAAGCATAATTTTGAAGTCAACAAGAAATATTGTTGAAATCCCACCCATTTTGTTTTCAAGAATGCACCAACTTAGGCTGCTTAATTTTCACAATGTGAGACTGAAAAAGCACATGGAATATTGCTGCATTATTCCAAGTGAGTTAAGATATTTGAAGTGGAAAGGATGTCCCTTTGAGTTTTTGCCATTTAGTAGTTCTCAAGAATATGAGCTTATTCAACTTCACGTCTGCCATAGCAACTTCAAACAATTTTGGCAAGGACAAAAGCATTTGGGGAAGTTGAAGTATATCAAACTGAATCATTCTAAGAGACTTTTGAGAACTCCAGACTTCACACAAGTTCCATATCTTGAAAGATTAGAGCTGGAAGGTTGCACAAGTTTAGTCAACATTCATCCATCCATTTTTGTTGCAAAAAGACTCATTTTTCTAAGCTTGAAAGATTGCATCAATCTCACCAAACTTCCATCCCATATTACCATTGAGGTTCTTGAAGTCCTAATTCTCTCAGGTTGTTTAAAGCTCAAAAAACTCCCAGAATTTACAGGCAACACAAGTAGATTACTACAACTCCATTTGGACAACACCTCCATTGCGTCCCTACCTTTATCTATTACAACCTTGACAAGCCTAACAATGCTAAGCTTAAATAATTGTAAAAGGTTGTTCCACATTCCTACAACCATTAAATGGCTGGTGTCTTTAAGCCACGTCAGTCGACCCTCGAAGCTTGAAAACCGAAAAAGAAAATTGGATGATGTTGAAGGGTTGGAGGAGCTCGATGCACGAGAAACAAGAAAAAGAAGAGACGGTAATGATAATAATAAGGATGAGGGTGGATGTAATAAAGTAAGACGGGTGTTGTTATGGTTATGCAGAACTCTAGGAAGCAATAATGTTTTTGGGATTTCGTTGGTGTTTCGTCTACAATCTCTTACCAAACTGGATCTAAAGGATTGCAACCTGAAATCTATCCCGGAAGAAATCGAGTACTTGGTGTCATTAAGAGAGCTGAATATTTCGGGTAACAACTTCTTACAATTTCCCATGAGCATTTCTCGACTTTATAACTTGAAAAGATTGATTATGAACCGATGCAAGATGCTTCAATATTACCCGAAGCTTCCTCCAGCGATCAGGAAGGCACGGTCAGTTGATTGTTTTATGGTGGAAATGTTTCCAAATTCAACTAAAGAGGGGGGTTCATATTTGGTGAATTTAATTGCTACAGACTAGCTAACAACAAACTCTATAAGTCGATCACGTCCAGTCAAAATGGAGCATTTAACATCCTAGTACCTAGAAATGAGATTGCAGAGTGGCTTACAACAACAAAAATGGGATCTTCAATTCTGATATTTGCATGTGCAAATATCAGAATGAAATAGTGCGGAATTCGTTTGATAAGTATGGAATAAGAGAAGGAGGTAATGAGATTGTGTACCCTTATCAGTAACAAGACAATTGTTAAAAAGGTCATAACATACACAATATTCAGTCTATGCCTTTGTTGATAAAAGCTTATATACCTCACTCTGTCATGTGCTTTGGTTTGTGGATACTGGATTATATCCTTTCACATTTTTGAA 3293 37.23 MAASSSTGRRWKYDVFLSFRGEDTRGGFTDHLYQALSRKGISTFRDENEIKEGSEISLDLSAAIEASRFAIVVVSENYASSRWCLGELVKIFECQDQFGTTVLPIFYKVNPSLVRNQRGSFGDAFLKHEERFGKDEFKVQKWRQVLTNIANLKAWLPQDWSYESEVIEKICEEIWKRIKKSLTTVIEEGQLIGITSKLNQISSLLIPNSESENDVMFIGIHGMGGIGKTTVAMALYEQIHDEFEAHCFLSNIRETFKTHNLPYLQSKLLTKMFAINNNDIYDAQEGIALITKAISQKKSLLVLDDVDQLEQITGLIPITKKCCFGYGSRVIITTRNADLMSIFEAKRMFKMGELEYKEAIELLSLNAFMEKCPKECYLDHAKSIVKLVGGHPLALKVLGTCLRNKDLSVWNCVLQELQEGGNIIVHEQIFKCLKVSYDGLDEKEKVIFLDVACFFKGKARDVVEEILDGCGLYAKRRIQLLIQKSLITLSHDNKLQVHDLLQEMSWRIVRRKLVQDRFWCHKDIIKNVFQDTKADIQSIILKSTRNIVEIPPILFSRMHQLRLLNFHNVRLKKHMEYCCIIPSELRYLKWKGCPFEFLPFSSSQEYELIQLHVCHSNFKQFWQGQKHLGKLKYIKLNHSKRLLRTPDFTQVPYLERLELEGCTSLVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLILSGCLKLKKLPEFTGNTSRLLQLHLDNTSIASLPLSITTLTSLTMLSLNNCKRLFHIPTTIKWLVSLSHVSRPSKLENRKRKLDDVEGLEELDARETRKRRDGNDNNKDEGGCNKVRRVLLWLCRTLGSNNVFGISLVFRLQSLTKLDLKDCNLKSIPEEIEYLVSLRELNISGNNFLQFPMSISRLYNLKRLIMNRCKMLQYYPKLPPAIRKARSVDCFMVEMFPNSTKEGGSYLVNLIATD 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4626657 4632019 + XM_039033214.1 Bhi06g00189 36528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00189 948 Gene3D Ribonuclease Inhibitor 515 815 IPR032675 -
Bhi06g00189 948 PRINTS Disease resistance protein signature 217 232 - -
Bhi06g00189 948 PRINTS Disease resistance protein signature 293 307 - -
Bhi06g00189 948 PRINTS Disease resistance protein signature 388 402 - -
Bhi06g00189 948 PRINTS Disease resistance protein signature 743 759 - -
Bhi06g00189 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 450 IPR027417 -
Bhi06g00189 948 Pfam NB-ARC domain 199 438 IPR002182 GO:0043531
Bhi06g00189 948 ProSiteProfiles TIR domain profile. 11 182 IPR000157 GO:0007165
Bhi06g00189 948 SUPERFAMILY L domain-like 555 907 - -
Bhi06g00189 948 Gene3D Ribonuclease Inhibitor 829 929 IPR032675 -
Bhi06g00189 948 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Bhi06g00189 948 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 776 IPR044974 GO:0006952
Bhi06g00189 948 SUPERFAMILY Winged helix DNA-binding domain 428 526 IPR036390 -
Bhi06g00189 948 ProSiteProfiles Leucine-rich repeat profile. 848 869 IPR001611 GO:0005515
Bhi06g00189 948 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 776 - -
Bhi06g00189 948 Gene3D - 9 174 IPR035897 -
Bhi06g00189 948 SMART till_3 12 152 IPR000157 GO:0007165
Bhi06g00189 948 Gene3D - 175 348 IPR027417 -
Bhi06g00189 948 Pfam TIR domain 12 188 IPR000157 GO:0007165
Bhi06g00189 948 Gene3D - 353 441 IPR042197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00189 - - - csv:105434389 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00189 Bhi-Chr6:4626657 Bhi11g02963 Bhi-Chr11:79931673 6.28E-180 dispersed
Bhi06g00182 Bhi-Chr6:4330600 Bhi06g00189 Bhi-Chr6:4626657 1.43E-169 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00189 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002764 0 1 0 0 0 2 0 2 2 1 2 2 3 1 2 7 2 0 0 2 1 2 2 4 4 3 0 7 3 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00189 Bhi_Chr06 FPKM 4.634301 4.823343 11.116878 11.951669 101.899071 98.268799 95.812607 10.377345 12.520011 10.639052