Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00226 TAGAATGGGATTAGTGTGGTTTAATTAAGGGTCGGTTAAGTTACAGAGAATTAAGGTTAGGGAAAATATTGCAGCGACCTGAAGCTAGTTTAAACTAGTGGAAGGTTGTGTGCGGATCGAGAAAAGTATAATGGCTCGTGGGAAAGTTCAAATGAAAAGGATTGAAAATCCAGTGCATAGACAAGTTACTTTCTGTAAACGTCGAGCTGGGCTCCTTAAAAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGAGTTTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCAATTGATCACCAAACTTTGGAAGTAAAGGAGGAGATCATCAGGCTGAAACAGGAAATTGAAGTCCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAGCCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGAGGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAATTATACAGGATGAGTTATTTCAGGTTTGCAATTAAAGTTAGAAGCTAGAAAAGCATATTATCTGTTTTAATGTAAAAAGAGAAAATATGATCAAGAAAC 815 39.39 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGAEGIMTLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQELILKAANKYLHDKMEENISNTTNIEPVNITNCQYPLIIQDELFQVCN 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5365627 5370888 + XM_039035242.1 Bhi06g00226 36565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00226 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Bhi06g00226 206 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00226 206 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 203 - -
Bhi06g00226 206 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bhi06g00226 206 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Bhi06g00226 206 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00226 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi06g00226 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00226 Bhi-Chr6:5365627 Bhi04g01166 Bhi-Chr4:28310982 4.95E-42 dispersed
Bhi06g00226 Bhi-Chr6:5365627 Bhi06g00234 Bhi-Chr6:5559007 2.35E-36 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1294 PF01486 K-box 3.00E-17 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00226 - - csv:105435626 395.201