Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00234 AATCATCATCATCTTCTTCTTTGTGGAAGAAAAGAAAAGAAGAATTAAAGATGGGAAGAGGAAAGATAGAGATAAAGAGAATAGAAAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAATAACAGCATCAAAACTACAATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAACTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTTGAGAGAGTTCAACAAGCAAACATGGTGTCTGGACAAGAACTGAACGCAATTCAGGCATTGGCTTCTCGCAATTTTTTCTCTCCTAATATGATGGAAGGTGGTGGAGCTGTTACTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGATGATTTGGAGCTGTTTTGGAGACCAAAATGATGGGGACAAATGTTTGTTTTAATTAACATTCAGAAAATCATTGAGATTACAGAAGAATTAAAATAAAATATGCCATCATTTTCTGAAGTAAAAAATTTAATTAATTTTACTTAATGATTAGTGATCATTATGATCAGTGTGTGATGTGATTTGCAGCTGTGTGTTTCACATTATATATATTATATACTACATACATATGATATATACTACAATGACTCTAATGCTGATGATGTGTAATCCTATAGATTATTTTTGTGCCTACATGGACCAATAGGAGTGTGAAACTTGACTATTCTTAAGTTCTACTTTTCTCTTAAATATTGTTC 1094 35.65 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALASRNFFSPNMMEGGGAVTFSHQDKKMLHLG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5559007 5571205 + XM_039033674.1 Bhi06g00234 36573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00234 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Bhi06g00234 228 Pfam K-box region 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00234 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bhi06g00234 228 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00234 228 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bhi06g00234 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi06g00234 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 218 - -
Bhi06g00234 228 Coils Coil 128 167 - -
Bhi06g00234 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00234 Bhi-Chr6:5559007 Bhi10g01007 Bhi-Chr10:20345472 2.44E-87 dispersed
Bhi06g00226 Bhi-Chr6:5365627 Bhi06g00234 Bhi-Chr6:5559007 2.35E-36 proximal
Bhi06g00233 Bhi-Chr6:5558729 Bhi06g00234 Bhi-Chr6:5559007 3.19E-169 tandem
Bhi06g00234 Bhi-Chr6:5559007 Bhi06g00235 Bhi-Chr6:5559278 3.27E-164 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1296 PF01486 K-box 1.60E-23 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00234 K09264 - csv:101208072 413.305