Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00235 GAAGAAAAGAAAAGAAGAATTAAAGATGGGAAGAGGAAAGATAGAGATAAAGAGAATAGAAAACACAACAAATAGACAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAATAACAGCATCAAAACTACAATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAACTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTTGAGAGAGTTCAACAAGCAAACATGGTGTCTGGACAAGAACTGAACGCAATTCAGGCATTGGCTTCTCGCAATTTTTTCTCTCCTAATATGATGGAAGGTGGTGGAGCTGTTACTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGATGATTTGGAGCTGTTTTGGAGACCAAAATGATGGGGACAAATGTTTGTTTTAATTAACATTCAGAAAATCATTGAGATTACAGAAGAATTAAAATAAAATATGCCATCATTTTCTGAAGTAAAAAATTTAATTAATTTTACTTAATGATTAGTGATCATTATGATCAGTGTGTGATGTGATTTGCAGCTGTGTGTTTCACATTATATATATTATATACTACATACATATGATATATACTACAATGACTCTAATGCTGATGATGTGTAATCCTATAGATTATTTTTGTGCCTACATGGACCAATAGGAGTGTGAAACTTGACTATTCTTAAGTTCTACTTTTCTCTTAAATATTGTTC 1057 35.76 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALASRNFFSPNMMEGGGAVTFSHQDKKMLHLG 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5559278 5571205 + XM_039033672.1 Bhi06g00235 36574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00235 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Bhi06g00235 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00235 224 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bhi06g00235 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi06g00235 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 214 - -
Bhi06g00235 224 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Bhi06g00235 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 214 - -
Bhi06g00235 224 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi06g00235 224 Coils Coil 124 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00010 Bhi-Chr3:156760 Bhi06g00235 Bhi-Chr6:5559278 3.84E-98 dispersed
Bhi06g00233 Bhi-Chr6:5558729 Bhi06g00235 Bhi-Chr6:5559278 3.27E-164 dispersed
Bhi06g00235 Bhi-Chr6:5559278 Bhi10g01007 Bhi-Chr10:20345472 1.69E-89 dispersed
Bhi08g01505 Bhi-Chr8:43387720 Bhi06g00235 Bhi-Chr6:5559278 3.57E-46 dispersed
Bhi08g01506 Bhi-Chr8:43387721 Bhi06g00235 Bhi-Chr6:5559278 5.24E-46 dispersed
Bhi11g01063 Bhi-Chr11:31391637 Bhi06g00235 Bhi-Chr6:5559278 6.75E-49 dispersed
Bhi12g00330 Bhi-Chr12:9514524 Bhi06g00235 Bhi-Chr6:5559278 4.79E-50 dispersed
Bhi12g00331 Bhi-Chr12:9514540 Bhi06g00235 Bhi-Chr6:5559278 4.79E-50 dispersed
Bhi06g00234 Bhi-Chr6:5559007 Bhi06g00235 Bhi-Chr6:5559278 3.27E-164 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1297 PF01486 K-box 8.70E-27 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00235 K09264 - csv:101208072 419.083