Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi06g00237 TCCGAACTCTCGTCGTTAGCGTTAGTAACCCCAATTCCCAAACTTCCCAAAAACATCTTCTCCCTTGACTTGTTGAGAATTTAGAAACCAAAAGCCGGAAGGGAATTCTGAATTTGTGTTCGCAGTGCAGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGGTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAGACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTTGATGGCCATATTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTGGTTGAATATGCACCTTCACAGCGTGTTCCCAGATCATCTACCAAAAAGGATGGTCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTCCTCAAACTCATTGCTAAACCTGCCGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAGCTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTTGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGAATTGGAATTTCGGATGTTGTTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATCTCTCATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGAGACTTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTAGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGTCACGGACAGAATTCATCAGTAGCTCAGTCTCATCCAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATGCTCGATCTGGGTCTAATGATATGTCCAGTAATGAACCGAATCCATCTGGCTCAGAAGGGGATGGAAAAAGGGCTCCAGATGGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGGTAATGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCGCCACGCAGTCGTTCAGATGCCTCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCACTTGCTTTCTGACTCAGTTGAAGCGTACCGTGGGGAAATGAAAGAAGATGTTCATGGAAGCAGGACAGGGGATGTTACAACCACTGTGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTCAGTTAGACATGTTGGACGTCGGGGGGCTGCCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAGCATATTTAAATCATGAAATAGGACGCAAAATATTTGATGGATGTGAATTTGTGATGAAATATTTATGAGAAAGAGTGAACCCCCAAGTTAATGCAGAAAGGTCTTCCAATTAACCAACAGATAACATGTACTGTAATTTGTTAAATGATGTCGGTGTGCATTTACATTAAGAAATAACACGGACGGACACAGACAAGGTTCAAAAATTTATCAGAAGGGGTGAGCTTATTATTGTTTCTGGCTATGAAGGTTATTACTTATCATTACTAATATTATTATTTGGCTGAAAGATGTACTGCTCTACTGCTATAATATCCAGGCCGCATAAGCTATCATTGAGACTGTCATCATAGGGGTTCCAAAATGTGAACTGAAATGGGGATAATAAATGACAGCTTCAATGAAATTCCTCACATCTCCTTCCTCACTGTTGCCATGCATTCTCCTTGAAGTCGGCACATATCTGCTGTTAGAGTCATAATTCTACCGTATATTGCCTGAATATTGTTTTTTTTTAATGTCTTTAGGTCTTTCGTTTATTATTTTGATAAGGACATATATTTGTTTTCATTGGATCATGACAATATCTATGTTATC 2280 42.37 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFGGRFNWSYYRPGKTSQKDQRYARAYIDFTRPEDVFEFAEFFDGHIFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKEAPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPELNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGISDVVTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSETSPASASKHNQRREASGSMIRSILLNNEARHGQNSSVAQSHPKIQILNSDNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDGKFSKKELHGLGSGNEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDVHGSRTGDVTTTVSGRNSSVENGSVRHVGRRGAAHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5651960 5658304 + XM_039034248.1 Bhi06g00237 36576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi06g00237 513 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Bhi06g00237 513 MobiDBLite consensus disorder prediction 313 329 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 168 199 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 273 298 - -
Bhi06g00237 513 CDD RRM_like_Smg4_UPF3 9 94 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 407 429 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 313 513 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 344 359 - -
Bhi06g00237 513 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 1 512 - -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 447 465 - -
Bhi06g00237 513 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 512 IPR039722 GO:0000184
Bhi06g00237 513 MobiDBLite consensus disorder prediction 364 403 - -
Bhi06g00237 513 Pfam Smg-4/UPF3 family 6 168 IPR005120 -
Bhi06g00237 513 Gene3D - 2 97 IPR012677 -
Bhi06g00237 513 MobiDBLite consensus disorder prediction 432 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi06g00237 K14328 UPF3, RENT3; regulator of nonsense transcripts 3 - csv:101208317 914.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00237 Bhi-Chr6:5651960 Bhi06g00239 Bhi-Chr6:5651961 0 dispersed
Bhi06g00236 Bhi-Chr6:5651960 Bhi06g00237 Bhi-Chr6:5651960 0 tandem
Bhi06g00237 Bhi-Chr6:5651960 Bhi06g00238 Bhi-Chr6:5651960 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1817 . . . . . . . . Bhi06g00237 Tan10g2036 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi06g00237 Bhi_Chr06 FPKM 3.174411 4.012096 1.401663 2.218683 56.173218 44.654232 52.511772 0.0 0.154084 0.0